Evidence map›Paper›PMID 26100022›Full record

ArticleMolecular and cellular biology2015

Enhancer of Rudimentary Homolog Affects the Replication Stress Response through Regulation of RNA Processing.

Gina Kavanaugh, Runxiang Zhao, Yan Guo, Kareem N Mohni, Gloria Glick, Monica E Lacy, M Shane Hutson, Manuel Ascano, David Cortez

Abstract read
In one paragraph

Article in Molecular and cellular biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. ERH Gene and Its Role in Cancer Cells.Frontiers in oncology · 2022
    Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Gina KavanaughDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, Tennessee, USA.
Runxiang ZhaoDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, Tennessee, USA.
Yan GuoDepartment of Cancer Biology, Vanderbilt University School of Medicine, Nashville, Tennessee, USA.
Kareem N MohniDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, Tennessee, USA.
Gloria GlickDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, Tennessee, USA.
Monica E LacyDepartment of Physics and Astronomy, Vanderbilt University, Nashville, Tennessee, USA.
M Shane HutsonDepartment of Physics and Astronomy, Vanderbilt University, Nashville, Tennessee, USA.
Manuel AscanoDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, Tennessee, USA.
David CortezDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, Tennessee, USA david.cortez@vanderbilt.edu.

Funding

The Vanderbilt Institute for Clinical and Translational Research (VICTR)UL1TR000445 · NCATS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI BERNARD, GORDON RAPHAEL · 2012 to 2016
$41.4M
TRAINING PROGRAM IN ENVIRONMENTAL TOXICOLOGYT32ES007028 · NIEHS · VANDERBILT UNIVERSITY · PI F PETER Guengerich, Fiona Edith Harrison · 1985 to 2026
$15.7M
BIOCHEMICAL &CHEMICAL TRAINING FOR CANCER RESEARCHT32CA009582 · NCI · VANDERBILT UNIVERSITY · PI David K Cortez · 1987 to 2026
$8.8M
Use of Beta-Lapachone for Lung Cancer ChemotherapyR01CA102792 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI BOOTHMAN, DAVID A · 2003 to 2017
$5.3M
Function of the ATR-ATRIP ComplexR01CA102729 · NCI · VANDERBILT UNIVERSITY · PI CORTEZ, DAVID K · 2003 to 2018
$4.2M
Training Grant In Radiation BiologyT32CA093240 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI FREEMAN, MICHAEL L. · 2002 to 2016
$2.3M
Automated Microscope for Long-Duration, Quantitative Dynamic ImagingS10RR027485 · NCRR · VANDERBILT UNIVERSITY · PI WIKSWO, JOHN PETER · 2010 to 2010
$500k
Identification and Characterization of Novel Replication Stress Response ProteinsF32GM103254 · NIGMS · VANDERBILT UNIVERSITY · PI KAVANAUGH, GINA M · 2012 to 2013
$98k
NCATS NIH HHS UL1 TR000445NCATS NIH HHS UL1TR000445NCI NIH HHS R01 CA102729NCI NIH HHS R01 CA102792NCI NIH HHS T32 CA009582NCI NIH HHS T32 CA093240NCI NIH HHS T32CA093240NCRR NIH HHS 1S10RR027485NCRR NIH HHS S10 RR027485NIEHS NIH HHS T32 ES007028NIGMS NIH HHS F32 GM103254
6 · The paper itself

Abstract

Accurate replication of DNA is imperative for the maintenance of genomic integrity. We identified Enhancer of Rudimentary Homolog (ERH) using a whole-genome RNA interference (RNAi) screen to discover novel proteins that function in the replication stress response. Here we report that ERH is important for DNA replication and recovery from replication stress. ATR pathway activity is diminished in ERH-deficient cells. The reduction in ATR signaling corresponds to a decrease in the expression of multiple ATR pathway genes, including ATR itself. ERH interacts with multiple RNA processing complexes, including splicing regulators. Furthermore, splicing of ATR transcripts is deficient in ERH-depleted cells. Transcriptome-wide analysis indicates that ERH depletion affects the levels of ∼1,500 transcripts, with DNA replication and repair genes being highly enriched among those with reduced expression. Splicing defects were evident in ∼750 protein-coding genes, which again were enriched for DNA metabolism genes. Thus, ERH regulation of RNA processing is needed to ensure faithful DNA replication and repair.

Indexed as

Ataxia Telangiectasia Mutated ProteinsBase SequenceCell Cycle ProteinsCell LineDNA DamageDNA RepairDNA ReplicationGene Expression ProfilingHEK293 CellsHumansRegulatory Sequences, Nucleic AcidRNA InterferenceRNA, Small InterferingRNA SplicingSequence Analysis, RNASignal TransductionAtaxia Telangiectasia Mutated ProteinsATR protein, humanCell Cycle ProteinsERH protein, humanRNA, Small InterferingTranscription Factors

Identifiers

PMID26100022
PMCPMC4525316

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.