Evidence map›Paper›PMID 26099801›Full record

ArticleBMC plant biology2015

Arabidopsis leucine-rich repeat extensin (LRX) proteins modify cell wall composition and influence plant growth.

Christian Draeger, Tohnyui Ndinyanka Fabrice, Emilie Gineau, Grégory Mouille, Benjamin M Kuhn, Isabel Moller, Marie-Therese Abdou, Beat Frey, Markus Pauly, Antony Bacic and 1 more

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
16.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 121 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Differential prolyl hydroxylation by six Physcomitrella prolyl-4 hydroxylases.Computational and structural biotechnology journal · 2024
    Article
  6. Article
  7. Whole-Genome Sequencing and Analysis of Tumour-Forming Radish (International journal of molecular sciences · 2024
    Article
  8. Phase separation: a new window in RALF signaling.Frontiers in plant science · 2024
    Article
  9. Article
  10. Review
  11. RALF peptides modulate immune response in the mossFrontiers in plant science · 2023
    Article
  12. The zinc finger protein 3 ofFrontiers in plant science · 2023
    Article
  13. Article
  14. Article
  15. Article
  16. Maintenance of Cell Wall Integrity under High Salinity.International journal of molecular sciences · 2021
    Review
  17. Article
  18. Article
  19. Physiological and Biochemical Traits of Two MajorFrontiers in plant science · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 7 institutions in 7 countries.

Christian DraegerInstitute of Plant Biology, University of Zürich, Zollikerstr. 107, Zürich, 8008, Switzerland. christian.draeger@gmx.ch.
Tohnyui Ndinyanka FabriceInstitute of Plant Biology, University of Zürich, Zollikerstr. 107, Zürich, 8008, Switzerland. nf.tohnyui@botinst.uzh.ch.
Emilie GineauINRA, Institut Jean-Pierre Bourgin, UMR1318 Saclay Plant Sciences, Versailles, 78026, France. Emilie.Gineau@versailles.inra.fr.
Grégory MouilleINRA, Institut Jean-Pierre Bourgin, UMR1318 Saclay Plant Sciences, Versailles, 78026, France. gregory.mouille@versailles.inra.fr.
Benjamin M KuhnDepartment of Plant and Microbial Biology, UC Berkeley, Berkeley, CA, 94720, USA. benkuhn@gmx.de.
Isabel MollerARC Centre of Excellence in Plant Cell Walls, School of Botany, the University of Melbourne, Parkville, Victoria, 3010, Australia. Isabel.Moller@plantandfood.co.nz.
Marie-Therese AbdouInstitute of Plant Biology, University of Zürich, Zollikerstr. 107, Zürich, 8008, Switzerland. m-t.abdou@bluewin.ch.
Beat FreySwiss Federal Research Institute WSL, Birmensdorf, 8903, Switzerland. beat.frey@wsl.ch.
Markus PaulyDepartment of Plant and Microbial Biology, UC Berkeley, Berkeley, CA, 94720, USA. mpauly69@berkeley.edu.
Antony BacicARC Centre of Excellence in Plant Cell Walls, School of Botany, the University of Melbourne, Parkville, Victoria, 3010, Australia. abacic@unimelb.edu.au.
Christoph RingliInstitute of Plant Biology, University of Zürich, Zollikerstr. 107, Zürich, 8008, Switzerland. chringli@botinst.uzh.ch.
University of Zurich · CHThe University of Melbourne · AUUniversity of California, Berkeley · USAgroParisTech · FRInstitut National de la Recherche Agronomique · MASwiss Federal Institute for Forest, Snow and Landscape Research · CHThermo Fisher Scientific (Israel) · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundLeucine-rich repeat extensins (LRXs) are extracellular proteins consisting of an N-terminal leucine-rich repeat (LRR) domain and a C-terminal extensin domain containing the typical features of this class of structural hydroxyproline-rich glycoproteins (HRGPs). The LRR domain is likely to bind an interaction partner, whereas the extensin domain has an anchoring function to insolubilize the protein in the cell wall. Based on the analysis of the root hair-expressed LRX1 and LRX2 of Arabidopsis thaliana, LRX proteins are important for cell wall development. The importance of LRX proteins in non-root hair cells and on the structural changes induced by mutations in LRX genes remains elusive.

resultsThe LRX gene family of Arabidopsis consists of eleven members, of which LRX3, LRX4, and LRX5 are expressed in aerial organs, such as leaves and stem. The importance of these LRX genes for plant development and particularly cell wall formation was investigated. Synergistic effects of mutations with gradually more severe growth retardation phenotypes in double and triple mutants suggest a similar function of the three genes. Analysis of cell wall composition revealed a number of changes to cell wall polysaccharides in the mutants.

conclusionsLRX3, LRX4, and LRX5, and most likely LRX proteins in general, are important for cell wall development. Due to the complexity of changes in cell wall structures in the lrx mutants, the exact function of LRX proteins remains to be determined. The increasingly strong growth-defect phenotypes in double and triple mutants suggests that the LRX proteins have similar functions and that they are important for proper plant development.

Indexed as

Gene Expression Regulation, PlantAmino Acid SequenceArabidopsisArabidopsis ProteinsCell WallGlycoproteinsLeucineMolecular Sequence DataSequence AlignmentArabidopsis ProteinsGlycoproteinsLeucineLRX3 protein, ArabidopsisLRX4 protein, ArabidopsisLRX5 protein, Arabidopsis

Identifiers

PMID26099801
PMCPMC4477543
OpenAlexW1514118629

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.