Evidence map›Paper›PMID 26099552›Full record

ArticleScientific reports2015

An integrated approach to reveal miRNAs' impacts on the functional consequence of copy number alterations in cancer.

Kening Li, Yongjing Liu, Yuanshuai Zhou, Rui Zhang, Ning Zhao, Zichuang Yan, Qiang Zhang, Shujuan Zhang, Fujun Qiu, Yan Xu

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Observational
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Kening Li1] College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China [2] School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China.
Yongjing LiuCollege of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China.
Yuanshuai ZhouCollege of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China.
Rui ZhangCollege of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China.
Ning ZhaoCollege of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China.
Zichuang YanCollege of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China.
Qiang ZhangCollege of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China.
Shujuan ZhangCollege of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China.
Fujun QiuCollege of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China.
Yan XuCollege of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China.
Harbin Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Copy number alteration (CNA) is known to induce gene expression changes mainly through dosage effect, and therefore affect the initiation and progression of tumor. However, tumor samples exhibit heterogeneity in gene dosage sensitivity due to the complicated mechanisms of transcriptional regulation. Currently, no high-throughput method has been available for identifying the regulatory factors affecting the functional consequences of CNA, and determining their effects on cancer. In view of the important regulatory role of miRNA, we investigated the influence of miRNAs on the dosage sensitivities of genes within the CNA regions. By integrating copy number, mRNA expression, miRNA expression profiles of three kinds of cancer, we observed a tendency for high dosage-sensitivity genes to be more targeted by miRNAs in cancer, and identified the miRNAs regulating the dosage sensitivity of amplified/deleted target genes. The results show that miRNAs can modulate oncogenic biological functions by regulating the genes within the CNA regions, and thus play a role as a trigger or balancer in cancer, affecting cancer processes, even survival. This work provided a framework for analyzing the regulation of dosage effect, which will shed a light on understanding the oncogenic and tumor suppressive mechanisms of CNA. Besides, new cancer-related miRNAs were identified.

Indexed as

Breast NeoplasmsDNA Copy Number VariationsFemaleGene DosageGene Expression Regulation, NeoplasticGenes, NeoplasmHumansMicroRNAsNeoplasmsSignal TransductionMicroRNAs

Identifiers

PMID26099552
PMCPMC4477324
OpenAlexW2253763867

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.