Evidence map›Paper›PMID 26098880›Full record

ArticlePloS one2015

Phenotypic Characterisation of Shewanella oneidensis MR-1 Exposed to X-Radiation.

Ashley R Brown, Elon Correa, Yun Xu, Najla AlMasoud, Simon M Pimblott, Royston Goodacre, Jonathan R Lloyd

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.1field-weighted citation impact, top 52% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Ashley R BrownWilliamson Research Centre for Molecular Environmental Science, University of Manchester, Oxford Road, Manchester, M13 9PL, United Kingdom; Research Centre for Radwaste and Decommissioning, University of Manchester, Oxford Road, Manchester, M13 9PL, United Kingdom; School of Earth, Atmospheric and Environmental Sciences, University of Manchester, Oxford Road, Manchester, M13 9PL, United Kingdom.
Elon CorreaManchester Institute of Biotechnology, University of Manchester, 131 Princess Street, Manchester, M1 7DN, United Kingdom.
Yun XuManchester Institute of Biotechnology, University of Manchester, 131 Princess Street, Manchester, M1 7DN, United Kingdom.
Najla AlMasoudManchester Institute of Biotechnology, University of Manchester, 131 Princess Street, Manchester, M1 7DN, United Kingdom.
Simon M PimblottDalton Cumbrian Facility, University of Manchester, Westlakes Science and Technology Park, Moor Row, Cumbria, CA24 3HA, United Kingdom; School of Chemistry, University of Manchester, Oxford Road, Manchester, M13 9PL, United Kingdom.
Royston GoodacreManchester Institute of Biotechnology, University of Manchester, 131 Princess Street, Manchester, M1 7DN, United Kingdom; School of Chemistry, University of Manchester, Oxford Road, Manchester, M13 9PL, United Kingdom.
Jonathan R LloydWilliamson Research Centre for Molecular Environmental Science, University of Manchester, Oxford Road, Manchester, M13 9PL, United Kingdom; Research Centre for Radwaste and Decommissioning, University of Manchester, Oxford Road, Manchester, M13 9PL, United Kingdom; School of Earth, Atmospheric and Environmental Sciences, University of Manchester, Oxford Road, Manchester, M13 9PL, United Kingdom.
University of Manchester · GBUniversity of Cumbria · GB

Funding

Biotechnology and Biological Sciences Research Council BB/F017472/1
6 · The paper itself

Abstract

Biogeochemical processes mediated by Fe(III)-reducing bacteria such as Shewanella oneidensis have the potential to influence the post-closure evolution of a geological disposal facility for radioactive wastes and to affect the solubility of some radionuclides. Furthermore, their potential to reduce both Fe(III) and radionuclides can be harnessed for the bioremediation of radionuclide-contaminated land. As some such sites are likely to have significant radiation fluxes, there is a need to characterise the impact of radiation stress on such microorganisms. There have, however, been few global cell analyses on the impact of ionizing radiation on subsurface bacteria, so here we address the metabolic response of S. oneidensis MR-1 to acute doses of X-radiation. UV/Vis spectroscopy and CFU counts showed that although X-radiation decreased initial viability and extended the lag phase of batch cultures, final biomass yields remained unchanged. FT-IR spectroscopy of whole cells indicated an increase in lipid associated vibrations and decreases in vibrations tentatively assigned to nucleic acids, phosphate, saccharides and amines. MALDI-TOF-MS detected an increase in total protein expression in cultures exposed to 12 Gy. At 95 Gy, a decrease in total protein levels was generally observed, although an increase in a putative cold shock protein was observed, which may be related to the radiation stress response of this organism. Multivariate statistical analyses applied to these FT-IR and MALDI-TOF-MS spectral data suggested that an irradiated phenotype developed throughout subsequent generations. This study suggests that significant alteration to the metabolism of S. oneidensis MR-1 is incurred as a result of X-irradiation and that dose dependent changes to specific biomolecules characterise this response. Irradiated S. oneidensis also displayed enhanced levels of poorly crystalline Fe(III) oxide reduction, though the mechanism underpinning this phenomenon is unclear.

Indexed as

Bacterial ProteinsDose-Response Relationship, RadiationFerric CompoundsRadiation DosageShewanellaSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationX-RaysBacterial ProteinsFerric Compoundsferric oxide

Identifiers

PMID26098880
PMCPMC4476702
OpenAlexW1494977676

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.