Evidence map›Paper›PMID 26098226›Full record

ArticleNature nanotechnology2015

A pH-independent DNA nanodevice for quantifying chloride transport in organelles of living cells.

Sonali Saha, Ved Prakash, Saheli Halder, Kasturi Chakraborty, Yamuna Krishnan

Abstract read
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Article in Nature nanotechnology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 91 papers.

0numbers the graph read from it
0cells of the map it votes in
91citing papers in PubMed
6.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

91 citing papers in PubMed, 220 citations in OpenAlex.

  1. Article
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  3. Ion transport as a determinant of membrane fusion and fission.Nature structural & molecular biology · 2026
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  14. Article
  15. Article
  16. Article
  17. Quantitative Chemical Imaging of Organelles.Accounts of chemical research · 2024
    Article
  18. Article
  19. Article
  20. Chloride ions in health and disease.Bioscience reports · 2024
    Review

31 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Sonali SahaNational Centre for Biological Sciences, TIFR, GKVK, Bellary Road, Bangalore 560065, India.
Ved PrakashDepartment of Chemistry, University of Chicago, 929E, 57th Street, E305A, GCIS, Chicago, Illinois 60637, USA.
Saheli HalderNational Centre for Biological Sciences, TIFR, GKVK, Bellary Road, Bangalore 560065, India.
Kasturi ChakrabortyDepartment of Chemistry, University of Chicago, 929E, 57th Street, E305A, GCIS, Chicago, Illinois 60637, USA.
Yamuna Krishnan1] National Centre for Biological Sciences, TIFR, GKVK, Bellary Road, Bangalore 560065, India [2] Department of Chemistry, University of Chicago, 929E, 57th Street, E305A, GCIS, Chicago, Illinois 60637, USA.
University of Chicago · USNational Centre for Biological Sciences · IN

Funding

Tumor Environment and Metastasis (TEAM) Research ProgramP30CA060553 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Daniela E Matei · 1993 to 2026
$153.9M
NCI NIH HHS P30 CA060553Wellcome Trust
6 · The paper itself

Abstract

The concentration of chloride ions in the cytoplasm and subcellular organelles of living cells spans a wide range (5-130 mM), and is tightly regulated by intracellular chloride channels or transporters. Chloride-sensitive protein reporters have been used to study the role of these chloride regulators, but they are limited to a small range of chloride concentrations and are pH-sensitive. Here, we show that a DNA nanodevice can precisely measure the activity and location of subcellular chloride channels and transporters in living cells in a pH-independent manner. The DNA nanodevice, called Clensor, is composed of sensing, normalizing and targeting modules, and is designed to localize within organelles along the endolysosomal pathway. It allows fluorescent, ratiometric sensing of chloride ions across the entire physiological regime. We used Clensor to quantitate the resting chloride concentration in the lumen of acidic organelles in Drosophila melanogaster. We showed that lumenal lysosomal chloride, which is implicated in various lysosomal storage diseases, is regulated by the intracellular chloride transporter DmClC-b.

Indexed as

Hydrogen-Ion ConcentrationAnimalsBiosensing TechniquesCells, CulturedChemistry Techniques, AnalyticalChloridesDNADrosophila melanogasterEquipment DesignEquipment Failure AnalysisMicroarray AnalysisNanotechnologyOrganellesReproducibility of ResultsSensitivity and SpecificityChloridesDNA

Identifiers

PMID26098226
OpenAlexW1572579115

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.