ReviewGenesis (New York, N.Y. : 2000)2015
Cross-organism analysis using InterMine.
Review in Genesis (New York, N.Y. : 2000), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
19 citing papers in PubMed.
- Genotype and phenotype data standardization, utilization and integration in the big data era for agricultural sciences.Database : the journal of biological databases and curation · 2023Review
- Genenames.org: the HGNC resources in 2023.Nucleic acids research · 2023Article
- Gramene: A Resource for Comparative Analysis of Plants Genomes and Pathways.Methods in molecular biology (Clifton, N.J.) · 2022Article
- Doing Genetic and Genomic Biology Using the Legume Information System and Associated Resources.Methods in molecular biology (Clifton, N.J.) · 2022Article
- The Zebrafish Information Network: major gene page and home page updates.Nucleic acids research · 2021Article
- Genome-wide association study of multiple yield traits in a diversity panel of polyploid sugarcane (Saccharum spp.).The plant genome · 2020Article
- Cyberinfrastructure and resources to enable an integrative approach to studying forest trees.Evolutionary applications · 2020Article
- The Alliance of Genome Resources: Building a Modern Data Ecosystem for Model Organism Databases.Genetics · 2019Review
- Target enrichment sequencing of 307 germplasm accessions identified ancestry of ancient and modern hybrids and signatures of adaptation and selection in sugarcane (Saccharum spp.), a 'sweet' crop with 'bitter' genomes.Plant biotechnology journal · 2019Article
- PopHumanScan: the online catalog of human genome adaptation.Nucleic acids research · 2019Article
- PlanMine 3.0-improvements to a mineable resource of flatworm biology and biodiversity.Nucleic acids research · 2019Article
- Using ZFIN: Data Types, Organization, and Retrieval.Methods in molecular biology (Clifton, N.J.) · 2018Article
- Naming CRISPR alleles: endonuclease-mediated mutation nomenclature across species.Mammalian genome : official journal of the International Mammalian Genome Society · 2017Review
- Article
- The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species.Nucleic acids research · 2017Article
- The Zebrafish Model Organism Database: new support for human disease models, mutation details, gene expression phenotypes and searching.Nucleic acids research · 2017Article
- An open and transparent process to select ELIXIR Node Services as implemented by ELIXIR-UK.F1000Research · 2016Article
- Mouse Genome Database: From sequence to phenotypes and disease models.Genesis (New York, N.Y. : 2000) · 2015Review
- ZFIN, The zebrafish model organism database: Updates and new directions.Genesis (New York, N.Y. : 2000) · 2015Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
24 authors.
Funding
Abstract
InterMine is a data integration warehouse and analysis software system developed for large and complex biological data sets. Designed for integrative analysis, it can be accessed through a user-friendly web interface. For bioinformaticians, extensive web services as well as programming interfaces for most common scripting languages support access to all features. The web interface includes a useful identifier look-up system, and both simple and sophisticated search options. Interactive results tables enable exploration, and data can be filtered, summarized, and browsed. A set of graphical analysis tools provide a rich environment for data exploration including statistical enrichment of sets of genes or other entities. InterMine databases have been developed for the major model organisms, budding yeast, nematode worm, fruit fly, zebrafish, mouse, and rat together with a newly developed human database. Here, we describe how this has facilitated interoperation and development of cross-organism analysis tools and reports. InterMine as a data exploration and analysis tool is also described. All the InterMine-based systems described in this article are resources freely available to the scientific community.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.