Evidence map›Paper›PMID 26096587›Full record

ArticlePhysiologia plantarum2015

Transcriptional programs regulated by both LEAFY and APETALA1 at the time of flower formation.

Cara M Winter, Nobutoshi Yamaguchi, Miin-Feng Wu, Doris Wagner

Abstract read
In one paragraph

Article in Physiologia plantarum, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. The Transcription FactorsInternational journal of molecular sciences · 2023
    Article
  10. Flower Development in Arabidopsis.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Cara M WinterDepartment of Biology, Duke University, Durham, NC, 27708, USA.
Nobutoshi YamaguchiDepartment of Biology, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Miin-Feng WuDepartment of Biology, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Doris WagnerDepartment of Biology, University of Pennsylvania, Philadelphia, PA, 19104, USA.

Funding

TRAINING PROGRAM IN DEVELOPMENTAL BIOLOGYT32HD007516 · NICHD · UNIVERSITY OF PENNSYLVANIA · PI RAPER, JONATHAN A · 1998 to 2012
$5.6M
Dynamics of the SHR-SCR Network Controlling Asymmetric Cell DivisionF32GM106690 · NIGMS · DUKE UNIVERSITY · PI WINTER, CARA · 2013 to 2015
$97k
NICHD NIH HHS T32 HD007516NICHD NIH HHS T32-HD007516NIGMS NIH HHS F32 GM106690NIGMS NIH HHS GM106690-01
6 · The paper itself

Abstract

Two key regulators of the switch to flower formation and of flower patterning in Arabidopsis are the plant-specific helix-turn-helix transcription factor LEAFY (LFY) and the MADS box transcription factor APETALA1 (AP1). The interactions between these two transcriptional regulators are complex. AP1 is both a direct target of LFY and can act in parallel with LFY. Available genetic and molecular evidence suggests that LFY and AP1 together orchestrate the switch to flower formation and early events during flower morphogenesis by altering transcriptional programs. However, very little is known about target genes regulated by both transcription factors. Here, we performed a meta-analysis of public datasets to identify genes that are likely to be regulated by both LFY and AP1. Our analyses uncovered known and novel direct LFY and AP1 targets with a role in the control of onset of flower formation. It also identified additional families of proteins and regulatory pathways that may be under transcriptional control by both transcription factors. In particular, several of these genes are linked to response to hormones, to transport and to development. Finally, we show that the gibberellin catabolism enzyme ELA1, which was recently shown to be important for the timing of the switch to flower formation, is positively feedback-regulated by AP1. Our study contributes to the elucidation of the regulatory network that leads to formation of a vital plant organ system, the flower.

Indexed as

Gene Expression ProfilingArabidopsisArabidopsis ProteinsCluster AnalysisCytochrome P-450 Enzyme SystemFlowersGene Expression Regulation, DevelopmentalGene Expression Regulation, PlantGene OntologyIn Situ HybridizationMADS Domain ProteinsMorphogenesisReverse Transcriptase Polymerase Chain ReactionTranscription FactorsAP1 protein, ArabidopsisArabidopsis Proteinscytochrome P-450 714A1 protein, ArabidopsisCytochrome P-450 Enzyme SystemLFY protein, ArabidopsisMADS Domain ProteinsTranscription Factors

Identifiers

PMID26096587
PMCPMC5757833

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.