Evidence map›Paper›PMID 26095251›Full record

ArticleCell2015

Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis.

Jacob H Levine, Erin F Simonds, Sean C Bendall, Kara L Davis, El-ad D Amir, Michelle D Tadmor, Oren Litvin, Harris G Fienberg, Astraea Jager, Eli R Zunder and 6 more

Registry-linked trialAbstract read
In one paragraph

Article in Cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT06626555 (Pilot, Randomized, Open-Label, Non-Active Comparator Controlled Clinical Trial to Evaluate the Effects of Letermovir Prophylaxis on T-cell Immune Activation in Participants With Treated HIV-1 Infection), which is not on this map. Cited by 1,372 papers.

0numbers the graph read from it
0cells of the map it votes in
1,372citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT06626555 phase2not yet recruitingnot on this mapstarted 2024, after this paper: background citation

Pilot, Randomized, Open-Label, Non-Active Comparator Controlled Clinical Trial to Evaluate the Effects of Letermovir Prophylaxis on T-cell Immune Activation in Participants With Treated HIV-1 Infection

TypeinterventionalSponsorUniversity College, LondonRan2024 to 2026Enrolled36ConditionsHIVArmsLetermovir
3 · Its place in the literature

Who cites it

1,372 citing papers in PubMed.

  1. Trial
  2. A conserved eIF1ACell reports. Medicine · 2026
    Trial
  3. Trial
  4. Nivolumab and Relatlimab for the Treatment of Patients with Unresectable or Metastatic Mismatch Repair-Proficient Colorectal Cancer.Clinical cancer research : an official journal of the American Association for Cancer Research · 2025
    Trial
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Current status and challenges of TCR-T cell therapy for AML/MDS.International journal of hematology · 2026
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Dendritic cell PD-L2 restrains intratumoral CD8bioRxiv : the preprint server for biology · 2026
    Article

1,312 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors.

Jacob H LevineDepartments of Biological Sciences and Systems Biology, Columbia University, New York, NY 10027, USA.
Erin F SimondsBaxter Laboratory in Stem Cell Biology, Department of Microbiology and Immunology, Stanford University, Stanford, CA 94305, USA.
Sean C BendallDepartment of Pathology, Stanford University, Stanford, CA 94305, USA.
Kara L DavisBaxter Laboratory in Stem Cell Biology, Department of Microbiology and Immunology, Stanford University, Stanford, CA 94305, USA.
El-ad D AmirDepartments of Biological Sciences and Systems Biology, Columbia University, New York, NY 10027, USA.
Michelle D TadmorDepartments of Biological Sciences and Systems Biology, Columbia University, New York, NY 10027, USA.
Oren LitvinDepartments of Biological Sciences and Systems Biology, Columbia University, New York, NY 10027, USA.
Harris G FienbergBaxter Laboratory in Stem Cell Biology, Department of Microbiology and Immunology, Stanford University, Stanford, CA 94305, USA.
Astraea JagerBaxter Laboratory in Stem Cell Biology, Department of Microbiology and Immunology, Stanford University, Stanford, CA 94305, USA.
Eli R ZunderBaxter Laboratory in Stem Cell Biology, Department of Microbiology and Immunology, Stanford University, Stanford, CA 94305, USA.
Rachel FinckBaxter Laboratory in Stem Cell Biology, Department of Microbiology and Immunology, Stanford University, Stanford, CA 94305, USA.
Amanda L GedmanDepartment of Pathology, St. Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, TN 38105, USA.
Ina RadtkeDepartment of Pathology, St. Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, TN 38105, USA.
James R DowningDepartment of Pathology, St. Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, TN 38105, USA.
Dana Pe'erDepartments of Biological Sciences and Systems Biology, Columbia University, New York, NY 10027, USA. Electronic address: dpeer@biology.columbia.edu.
Garry P NolanBaxter Laboratory in Stem Cell Biology, Department of Microbiology and Immunology, Stanford University, Stanford, CA 94305, USA. Electronic address: gnolan@stanford.edu.

Funding

Using a tonsil organoid system to probe conditions for the induction of protective antibody and T cell responses to influenza.U19AI057229 · NIAID · STANFORD UNIVERSITY · PI Mark Morris Davis · 2003 to 2026
$88.5M
Nation Center: Multi-Scale Study- Cellular Networks(RMI)U54CA121852 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALIFANO, ANDREA · 2005 to 2015
$37.4M
TRIGGERING CELL DEATH IN B CELL LYMPHOMAP01CA034233 · NCI · STANFORD UNIVERSITY · PI TIBSHIRANI, ROB · 1985 to 2010
$19.5M
TRANS-NETWORK PROJECTSU54CA143907 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI NOLAN, GARRY P · 2009 to 2013
$15.2M
MODELING THE ROLE OF PROGRESSION IN FOLLICULAR LYMPHOMAU54CA149145 · NCI · STANFORD UNIVERSITY · PI PLEVRITIS, SYLVIA KATINA · 2010 to 2014
$12.1M
MOLECULAR BASIS OF HOST-PARASITE INTERACTIONT32AI007328 · NIAID · STANFORD UNIVERSITY · PI JUSTIN L SONNENBURG · 1987 to 2026
$11.9M
Software & Hardware Inference Engines for Automated Determination of Primary CellR01CA130826 · NCI · STANFORD UNIVERSITY · PI NOLAN, GARRY P · 2008 to 2011
$6.7M
CELLULAR AND MOLECULAR FOUNDATIONS OF BIOMEDICAL SCIENCET32GM008798 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI PRYWES, RON M · 2001 to 2018
$6.3M
Single cell mapping of developmental trajectories underlying health and diseaseDP1HD084071 · NICHD · SLOAN-KETTERING INST CAN RESEARCH · PI PE'ER, DANA · 2014 to 2018
$4.2M
Genetic variation and regulatory networks: Mechanisms and complexityDP2OD002414 · OD · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI PE'ER, DANA · 2007 to 2009
$2.5M
Integrative Cancer Genomics: Drivers, Pathways and DrugsR01CA164729 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI PE'ER, DANA · 2012 to 2016
$1.9M
A single-cell platform to discover and study regulators of human developmentR00GM104148 · NIGMS · STANFORD UNIVERSITY · PI BENDALL, SEAN CURTIS · 2014 to 2016
$747k
NCCDPHP CDC HHS DP1-HD084071NCI NIH HHS 1R01CA130826NCI NIH HHS 5U54CA143907NCI NIH HHS P01 CA034233NCI NIH HHS R01 CA130826NCI NIH HHS R01 CA164729NCI NIH HHS R01-CA164729NCI NIH HHS U54 CA121852NCI NIH HHS U54-CA121852NCI NIH HHS U54 CA143907NCI NIH HHS U54 CA149145NCI NIH HHS U54CA149145NHLBI NIH HHS N01-HV-00242NIAID NIH HHS HHSN272200700038CNIAID NIH HHS T32 AI007328NIAID NIH HHS U19 AI057229NICHD NIH HHS DP1 HD084071NIGMS NIH HHS 1R00-GM104148NIGMS NIH HHS R00 GM104148NIGMS NIH HHS T32 GM008798NIH HHS DP2 OD002414NIH HHS DP2-OD002414PHS HHS HHSF223201210194C
6 · The paper itself

Abstract

Acute myeloid leukemia (AML) manifests as phenotypically and functionally diverse cells, often within the same patient. Intratumor phenotypic and functional heterogeneity have been linked primarily by physical sorting experiments, which assume that functionally distinct subpopulations can be prospectively isolated by surface phenotypes. This assumption has proven problematic, and we therefore developed a data-driven approach. Using mass cytometry, we profiled surface and intracellular signaling proteins simultaneously in millions of healthy and leukemic cells. We developed PhenoGraph, which algorithmically defines phenotypes in high-dimensional single-cell data. PhenoGraph revealed that the surface phenotypes of leukemic blasts do not necessarily reflect their intracellular state. Using hematopoietic progenitors, we defined a signaling-based measure of cellular phenotype, which led to isolation of a gene expression signature that was predictive of survival in independent cohorts. This study presents new methods for large-scale analysis of single-cell heterogeneity and demonstrates their utility, yielding insights into AML pathophysiology.

Indexed as

Bone MarrowChildCohort StudiesComputational BiologyGenetic HeterogeneityHumansLeukemia, Myeloid, AcuteNeoplastic Stem CellsSingle-Cell AnalysisTranscriptome

Identifiers

PMID26095251
PMCPMC4508757

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.