Evidence map›Paper›PMID 26094597›Full record

ArticleMolecular and biochemical parasitology2015

Identification of the minimal binding region of a Plasmodium falciparum IgM binding PfEMP1 domain.

Jean-Philippe Semblat, Ashfaq Ghumra, Daniel M Czajkowsky, Russell Wallis, Daniel A Mitchell, Ahmed Raza, J Alexandra Rowe

Open access · hybridAbstract read
In one paragraph

Article in Molecular and biochemical parasitology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Complement C1s cleaves PfEMP1 at interdomain conserved sites inhibitingProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  3. Naturally Acquired Humoral Immunity AgainstFrontiers in immunology · 2020
    Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Jean-Philippe SemblatInstitute of Immunology and Infection Research, Centre for Immunity, Infection and Evolution, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3FL, United Kingdom.
Ashfaq GhumraInstitute of Immunology and Infection Research, Centre for Immunity, Infection and Evolution, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3FL, United Kingdom.
Daniel M CzajkowskyBio-ID Center, School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, China.
Russell WallisDepartment of Infection, Immunity and Inflammation, University of Leicester, Leicester, United Kingdom.
Daniel A MitchellClinical Sciences Research Laboratories, Warwick Medical School, Coventry CV2 2DX, United Kingdom.
Ahmed RazaInstitute of Immunology and Infection Research, Centre for Immunity, Infection and Evolution, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3FL, United Kingdom.
J Alexandra RoweInstitute of Immunology and Infection Research, Centre for Immunity, Infection and Evolution, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3FL, United Kingdom. Electronic address: Alex.Rowe@ed.ac.uk.
Centre for Immunity, Infection and Evolution · GBCoventry (United Kingdom) · GBShanghai Jiao Tong University · CNUniversity of Leicester · GB

Funding

PHS HHS 084226Wellcome Trust 084226Wellcome Trust 095831
6 · The paper itself

Abstract

Binding of host immunoglobulin is a common immune evasion mechanism demonstrated by microbial pathogens. Previous work showed that the malaria parasite Plasmodium falciparum binds the Fc-region of human IgM molecules, resulting in a coating of IgM on the surface of infected erythrocytes. IgM binding is a property of P. falciparum strains showing virulence-related phenotypes such as erythrocyte rosetting. The parasite ligands for IgM binding are members of the diverse P. falciparum Erythrocyte Membrane Protein One (PfEMP1) family. However, little is known about the amino acid sequence requirements for IgM binding. Here we studied an IgM binding domain from a rosette-mediating PfEMP1 variant, DBL4ζ of TM284var1, and found that the minimal IgM binding region mapped to the central region of the DBL domain, comprising all of subdomain 2 and adjoining parts of subdomains 1 and 3. Site-directed mutagenesis of charged amino acids within subdomain 2, predicted by molecular modelling to form the IgM binding site, showed no marked effect on IgM binding properties. Overall, this study identifies the minimal IgM binding region of a PfEMP1 domain, and indicates that the existing homology model of PfEMP1-IgM interaction is incorrect. Further work is needed to identify the specific interaction site for IgM within the minimal binding region of PfEMP1.

Indexed as

Amino Acid SequenceImmunoglobulin MModels, MolecularMolecular Sequence DataMutagenesis, Site-DirectedProtein BindingProtein ConformationProtein Interaction Domains and MotifsProtozoan Proteinserythrocyte membrane protein 1, Plasmodium falciparumImmunoglobulin MProtozoan ProteinsCell AdhesionDBL domainFc-receptorImmunoglobulin MRosettingVar gene

Identifiers

PMID26094597
PMCPMC4539346
OpenAlexW1959426503

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.