Evidence map›Paper›PMID 26092942›Full record

ArticleRNA (New York, N.Y.)2015

The Lsm1-7-Pat1 complex promotes viral RNA translation and replication by differential mechanisms.

Jennifer Jungfleisch, Ashis Chowdhury, Isabel Alves-Rodrigues, Sundaresan Tharun, Juana Díez

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
5.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Jennifer JungfleischDepartment of Experimental and Health Sciences, Universitat Pompeu Fabra, 08003 Barcelona, Spain.
Ashis ChowdhuryDepartment of Biochemistry, Uniformed Services University of the Health Sciences (USUHS), Bethesda, Maryland 20814-4799, USA.
Isabel Alves-RodriguesDepartment of Experimental and Health Sciences, Universitat Pompeu Fabra, 08003 Barcelona, Spain.
Sundaresan TharunDepartment of Biochemistry, Uniformed Services University of the Health Sciences (USUHS), Bethesda, Maryland 20814-4799, USA.
Juana DíezDepartment of Experimental and Health Sciences, Universitat Pompeu Fabra, 08003 Barcelona, Spain.
Universitat Pompeu Fabra · ESUniformed Services University of the Health Sciences · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Lsm1-7-Pat1 complex binds to the 3' end of cellular mRNAs and promotes 3' end protection and 5'-3' decay. Interestingly, this complex also specifically binds to cis-acting regulatory sequences of viral positive-strand RNA genomes promoting their translation and subsequent recruitment from translation to replication. Yet, how the Lsm1-7-Pat1 complex regulates these two processes remains elusive. Here, we show that Lsm1-7-Pat1 complex acts differentially in these processes. By using a collection of well-characterized lsm1 mutant alleles and a system that allows the replication of Brome mosaic virus (BMV) in yeast we show that the Lsm1-7-Pat1 complex integrity is essential for both, translation and recruitment. However, the intrinsic RNA-binding ability of the complex is only required for translation. Consistent with an RNA-binding-independent function of the Lsm1-7-Pat1 complex on BMV RNA recruitment, we show that the BMV 1a protein, the sole viral protein required for recruitment, interacts with this complex in an RNA-independent manner. Together, these results support a model wherein Lsm1-7-Pat1 complex binds consecutively to BMV RNA regulatory sequences and the 1a protein to promote viral RNA translation and later recruitment out of the host translation machinery to the viral replication complexes.

Indexed as

BromovirusMutationRegulatory Sequences, Ribonucleic AcidRNA-Binding ProteinsRNA Cap-Binding ProteinsRNA, MessengerRNA, ViralSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsViral ProteinsVirologyVirus ReplicationLSM1 protein, S cerevisiaeLSM7 protein, S cerevisiaePAT1 protein, S cerevisiaeRegulatory Sequences, Ribonucleic AcidRNA-Binding ProteinsRNA Cap-Binding ProteinsRNA, MessengerRNA, ViralSaccharomyces cerevisiae ProteinsViral ProteinsBMVdecapping activatorsLsm1-7Lsm1-7-Pat1 complexLsm proteinsPat1replicationRNA virustranslationviral RNA

Identifiers

PMID26092942
PMCPMC4509936
OpenAlexW1938159926

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.