Evidence map›Paper›PMID 26092697›Full record

ArticleNucleic acids research2015

Ionic switch controls the DNA state in phage λ.

Dong Li, Ting Liu, Xiaobing Zuo, Tao Li, Xiangyun Qiu, Alex Evilevitch

Abstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Viral Genome Delivery Across Bacterial Cell Surfaces.Annual review of microbiology · 2024
    Review
  2. Article
  3. Article
  4. Temperature-induced DNA density transition in phage λ capsid revealed with contrast-matching SANS.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  5. Article
  6. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Dong LiPhysics Department, Carnegie Mellon University, Pittsburgh, PA 15213, USA.
Ting LiuPhysics Department, Carnegie Mellon University, Pittsburgh, PA 15213, USA.
Xiaobing ZuoX-ray Science Division, Advanced Photon Source, Argonne National Laboratory, Argonne, IL 60439, USA.
Tao LiX-ray Science Division, Advanced Photon Source, Argonne National Laboratory, Argonne, IL 60439, USA.
Xiangyun QiuDepartment of Physics, The George Washington University, Washington, DC 20052, USA.
Alex EvilevitchPhysics Department, Carnegie Mellon University, Pittsburgh, PA 15213, USA Department of Biochemistry and Structural Biology, Lund University, SE-221 00 Lund, Sweden alexe@cmu.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We have recently found that DNA packaged in phage λ undergoes a disordering transition triggered by temperature, which results in increased genome mobility. This solid-to-fluid like DNA transition markedly increases the number of infectious λ particles facilitating infection. However, the structural transition strongly depends on temperature and ionic conditions in the surrounding medium. Using titration microcalorimetry combined with solution X-ray scattering, we mapped both energetic and structural changes associated with transition of the encapsidated λ-DNA. Packaged DNA needs to reach a critical stress level in order for transition to occur. We varied the stress on DNA in the capsid by changing the temperature, packaged DNA length and ionic conditions. We found striking evidence that the intracapsid DNA transition is 'switched on' at the ionic conditions mimicking those in vivo and also at the physiologic temperature of infection at 37°C. This ion regulated on-off switch of packaged DNA mobility in turn affects viral replication. These results suggest a remarkable adaptation of phage λ to the environment of its host bacteria in the human gut. The metastable DNA state in the capsid provides a new paradigm for the physical evolution of viruses.

Indexed as

DNA PackagingBacteriophage lambdaCapsidDNA, ViralGenome, ViralOsmolar ConcentrationTemperatureDNA, Viral

Identifiers

PMID26092697
PMCPMC4513876

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.