Evidence map›Paper›PMID 26092468›Full record

ArticleApplied and environmental microbiology2015

Pyrobaculum yellowstonensis Strain WP30 Respires on Elemental Sulfur and/or Arsenate in Circumneutral Sulfidic Geothermal Sediments of Yellowstone National Park.

Z J Jay, J P Beam, A Dohnalkova, R Lohmayer, B Bodle, B Planer-Friedrich, M Romine, W P Inskeep

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.9field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 28 citations in OpenAlex.

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  4. Transcriptional Control ofApplied and environmental microbiology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Z J JayThermal Biology Institute and Department of Land Resources and Environmental Sciences, Montana State University, Bozeman, Montana, USA.
J P BeamThermal Biology Institute and Department of Land Resources and Environmental Sciences, Montana State University, Bozeman, Montana, USA.
A DohnalkovaPacific Northwest National Laboratory, Richland, Washington, USA.
R LohmayerEnvironmental Geochemistry, Bayreuth Center for Ecology and Environmental Research (BayCEER), Bayreuth University, Bayreuth, Germany.
B BodleDepartment of Biochemistry, Montana State University, Bozeman, Montana, USA.
B Planer-FriedrichEnvironmental Geochemistry, Bayreuth Center for Ecology and Environmental Research (BayCEER), Bayreuth University, Bayreuth, Germany.
M RominePacific Northwest National Laboratory, Richland, Washington, USA.
W P InskeepThermal Biology Institute and Department of Land Resources and Environmental Sciences, Montana State University, Bozeman, Montana, USA binskeep@montana.edu.
Montana State University · USPacific Northwest National Laboratory · USUniversity of Bayreuth · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Thermoproteales (phylum Crenarchaeota) populations are abundant in high-temperature (>70°C) environments of Yellowstone National Park (YNP) and are important in mediating the biogeochemical cycles of sulfur, arsenic, and carbon. The objectives of this study were to determine the specific physiological attributes of the isolate Pyrobaculum yellowstonensis strain WP30, which was obtained from an elemental sulfur sediment (Joseph's Coat Hot Spring [JCHS], 80°C, pH 6.1, 135 μM As) and relate this organism to geochemical processes occurring in situ. Strain WP30 is a chemoorganoheterotroph and requires elemental sulfur and/or arsenate as an electron acceptor. Growth in the presence of elemental sulfur and arsenate resulted in the formation of thioarsenates and polysulfides. The complete genome of this organism was sequenced (1.99 Mb, 58% G+C content), revealing numerous metabolic pathways for the degradation of carbohydrates, amino acids, and lipids. Multiple dimethyl sulfoxide-molybdopterin (DMSO-MPT) oxidoreductase genes, which are implicated in the reduction of sulfur and arsenic, were identified. Pathways for the de novo synthesis of nearly all required cofactors and metabolites were identified. The comparative genomics of P. yellowstonensis and the assembled metagenome sequence from JCHS showed that this organism is highly related (∼95% average nucleotide sequence identity) to in situ populations. The physiological attributes and metabolic capabilities of P. yellowstonensis provide an important foundation for developing an understanding of the distribution and function of these populations in YNP.

Indexed as

ArsenatesBacterial ProteinsBase CompositionGeologic SedimentsMetagenomeMolecular Sequence DataParks, RecreationalPhylogenyPyrobaculumSulfurArsenatesarsenic acidBacterial ProteinsSulfur

Identifiers

PMID26092468
PMCPMC4551270
OpenAlexW1947667908

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.