Evidence map›Paper›PMID 26092436›Full record

ArticleBiochimica et biophysica acta2015

The chromatin remodeler chd5 is necessary for proper head development during embryogenesis of Danio rerio.

Brett Bishop, Kwok Ki Ho, Kim Tyler, Amanda Smith, Sylvia Bonilla, Yuk Fai Leung, Joe Ogas

Abstract read
In one paragraph

Article in Biochimica et biophysica acta, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

  1. Chromodomain helicase DNA-binding proteins and orofacial cleft.Journal of research in medical sciences : the official journal of Isfahan University of Medical Sciences · 2026
    Review
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  6. nox2/cybb Deficiency Affects Zebrafish Retinotectal Connectivity.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2018
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Brett BishopDepartment of Biochemistry and Purdue Center for Cancer Research, Purdue University, West Lafayette, IN 47907, United States.
Kwok Ki HoDepartment of Biochemistry and Purdue Center for Cancer Research, Purdue University, West Lafayette, IN 47907, United States.
Kim TylerDepartment of Biochemistry and Purdue Center for Cancer Research, Purdue University, West Lafayette, IN 47907, United States.
Amanda SmithDepartment of Biochemistry and Purdue Center for Cancer Research, Purdue University, West Lafayette, IN 47907, United States.
Sylvia BonillaDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907, United States.
Yuk Fai LeungDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907, United States.
Joe OgasDepartment of Biochemistry and Purdue Center for Cancer Research, Purdue University, West Lafayette, IN 47907, United States. Electronic address: ogas@purdue.edu.
Purdue University West Lafayette · USCenter for Cancer Research · US

Funding

Transgenic Mouse Core Facility Shared Resource (TMCF-SR)P30CA023168 · NCI · PURDUE UNIVERSITY WEST LAFAYETTE · PI John Tesmer · 1985 to 2026
$43.4M
Determination of the role of CHD5 tumor suppressor in the zebrafish modelR21CA182197 · NCI · PURDUE UNIVERSITY · PI OGAS, JOSEPH P · 2014 to 2015
$353k
NCI NIH HHS P30 CA023168NCI NIH HHS R21 CA182197
6 · The paper itself

Abstract

The chromatin remodeler CHD5 plays a critical role in tumor suppression and neurogenesis in mammals. CHD5 contributes to gene expression during neurogenesis, but there is still much to learn regarding how this class of remodelers contributes to differentiation and development. CHD5 remodelers are vertebrate-specific, raising the prospect that CHD5 plays one or more conserved roles in this phylum. Expression of chd5 in adult fish closely mirrors expression of CHD5 in adult mammals. Knockdown of Chd5 during embryogenesis suggests new roles for CHD5 remodelers based on resulting defects in craniofacial development including reduced head and eye size as well as reduced cartilage formation in the head. In addition, knockdown of Chd5 results in altered expression of neural markers in the developing brain and eye as well as a profound defect in differentiation of dopaminergic amacrine cells. Recombinant zebrafish Chd5 protein exhibits nucleosome remodeling activity in vitro, suggesting that it is the loss of this activity that contributes to the observed phenotypes. Our studies indicate that zebrafish is an appropriate model for functional characterization of CHD5 remodelers in vertebrates and highlight the potential of this model for generating novel insights into the role of this vital class of remodelers.

Indexed as

Adenosine TriphosphatasesAnimalsAnimals, Genetically ModifiedBrainCartilageCell DifferentiationChromatin Assembly and DisassemblyDNA HelicasesDopaminergic NeuronsEmbryonic DevelopmentEmbryo, NonmammalianEyeHeadNeurogenesisZebrafishZebrafish ProteinsAdenosine TriphosphatasesCHD5 protein, zebrafishDNA HelicasesZebrafish ProteinsATP-dependent chromatin remodelingCHD remodelerEmbryogenesisNeural development

Identifiers

PMID26092436
PMCPMC4544782
OpenAlexW898927241

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.