Evidence map›Paper›PMID 26091559›Full record

ArticleExperimental and molecular pathology2015

Protein domains of APOL1 and its risk variants.

Xiqian Lan, Hongxiu Wen, Rivka Lederman, Ashwani Malhotra, Joanna Mikulak, Waldemar Popik, Karl Skorecki, Pravin C Singhal

Abstract read
In one paragraph

Article in Experimental and molecular pathology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. A novelRenal failure · 2025
    Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. APOL1 Kidney Risk Variants Induce Cell DeathJournal of the American Society of Nephrology : JASN · 2019
    Article
  20. APOL1 and kidney cell function.American journal of physiology. Renal physiology · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Xiqian LanRenal Molecular Research Laboratory, Feinstein Institute for Medical Research, Hofstra North Shore LIJ Medical School, NY, United States. Electronic address: xlan@nshs.edu.
Hongxiu WenRenal Molecular Research Laboratory, Feinstein Institute for Medical Research, Hofstra North Shore LIJ Medical School, NY, United States.
Rivka LedermanRenal Molecular Research Laboratory, Feinstein Institute for Medical Research, Hofstra North Shore LIJ Medical School, NY, United States.
Ashwani MalhotraRenal Molecular Research Laboratory, Feinstein Institute for Medical Research, Hofstra North Shore LIJ Medical School, NY, United States.
Joanna MikulakImmunology Institute, Milan, Italy.
Waldemar PopikMeharry Medical School, Nashville, TN, United States.
Karl SkoreckiNephrology and Molecular Medicine, Technion Institute of Technology and Rambam Medical Center, Haifa, Israel.
Pravin C SinghalRenal Molecular Research Laboratory, Feinstein Institute for Medical Research, Hofstra North Shore LIJ Medical School, NY, United States. Electronic address: psinghal@nshs.edu.
Feinstein Institute for Medical Research · USMeharry Medical College · USTechnion – Israel Institute of Technology · IL

Funding

Meharry RCMI Program in Women's Health ResearchG12MD007586 · NIMHD · MEHARRY MEDICAL COLLEGE · PI HILDRETH, JAMES E · 2012 to 2016
$7.8M
p66ShcA in HIV associated NephropathyR01DK083931 · NIDDK · FEINSTEIN INSTITUTE FOR MEDICAL RESEARCH · PI SINGHAL, PRAVIN C · 2010 to 2013
$2.5M
Epigenetic factors and HIV-associated NephropathyR01DK098074 · NIDDK · FEINSTEIN INSTITUTE FOR MEDICAL RESEARCH · PI SINGHAL, PRAVIN C · 2013 to 2016
$2.5M
Renin Angioensin Aldosterone System in Drub Abuse and HIV-associated NephropathyR01DK084910 · NIDDK · FEINSTEIN INSTITUTE FOR MEDICAL RESEARCH · PI SINGHAL, PRAVIN C · 2010 to 2014
$1.7M
Role of APOL1 in HIVAN pathogenesisR21DK094735 · NIDDK · MEHARRY MEDICAL COLLEGE · PI POPIK, WALDEMAR · 2012 to 2013
$394k
NIDDK NIH HHS R01 DK083931NIDDK NIH HHS R01 DK084910NIDDK NIH HHS R01DK084910NIDDK NIH HHS R01 DK098074NIDDK NIH HHS R01DK 098074NIDDK NIH HHS R21 DK094735NIDDK NIH HHS R21DK094735NIMHD NIH HHS G12 MD007586
6 · The paper itself

Abstract

Increasing lines of evidence have demonstrated that the development of higher rates of non-diabetic glomerulosclerosis (GS) in African Americans can be attributed to two coding sequence variants (G1 and G2) in the Apolipoprotein L1 (APOL) gene. Recent studies indicate that the gene products of these APOL1 risk variants have augmented toxicity to kidney cells. However, the biological characteristics of APOL1 and its risk variants are not well elucidated. The APOL1 protein can be divided into several functional domains, including signal peptide (SP), pore forming domain (PFD), membrane address domain (MAD), and SRA-interacting domain. To investigate the relative contribution of each domain to cell injury, we constructed a serial expression vectors to delete or express each domain. These vectors were transfected into the human embryonic kidney cell line 293T, and then compared the cytotoxicity. In addition, we conducted studies in which APOL1 wild type (G0) was co-transfected in combination with G1 or G2 to see whether G0 could counteract the toxicity of the risk variants. The results showed that deleting the SP did not abolish the toxicity of APOL1, though deletion of 26 amino acid residues of the mature peptide at the N-terminal partially decreased the toxicity. Deleting PFD or MAD or SRA-interacting domain abolished toxicity, while, overexpressing each domain alone could not cause toxicity to the host cells. Deletion of the G2 sites while retaining G1 sites in the risk state resulted in persistent toxicity. Either deletion or exchanging the BH3 domain in the PFD led to complete loss of the toxicity in this experimental platform. Adding G0 to either G1 or G2 did not attenuate the toxicity of the either moiety. These results indicate that the integrity of the mature APOL1 protein is indispensable for its toxicity. Our study not only reveals the contribution of each domain of the APOL1 protein to cell injury, but also highlights some potential suggested targets for drug design to prevent or treat APOL1-associated nephropathy.

Indexed as

Genetic VariationApolipoprotein L1ApolipoproteinsBlack or African AmericanGenotypeHEK293 CellsHumansKidney DiseasesLipoproteins, HDLProtein Structure, TertiaryRisk FactorsAPOL1 protein, humanApolipoprotein L1ApolipoproteinsLipoproteins, HDLAPOL1DomainIntegrityRisk variantsToxicity

Identifiers

PMID26091559
PMCPMC4509982
OpenAlexW576991075

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.