Evidence map›Paper›PMID 26091040›Full record

ArticleCell2015

Crystal Structure of Antagonist Bound Human Lysophosphatidic Acid Receptor 1.

Jill E Chrencik, Christopher B Roth, Masahiko Terakado, Haruto Kurata, Rie Omi, Yasuyuki Kihara, Dora Warshaviak, Shinji Nakade, Guillermo Asmar-Rovira, Mauro Mileni and 8 more

Abstract read
In one paragraph

Article in Cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 111 papers.

0numbers the graph read from it
0cells of the map it votes in
111citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

111 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Molecular mechanism of ligand recognition and activation of lysophosphatidic acid receptor LPAR6.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. G Protein-Coupled Receptor-Ligand Pose and Functional Class Prediction.International journal of molecular sciences · 2024
    Article
  17. Article
  18. Article
  19. Article
  20. Article

51 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Jill E ChrencikDepartment of Structural Discovery, Receptos, San Diego, CA 92121, USA.
Christopher B RothDepartment of Structural Discovery, Receptos, San Diego, CA 92121, USA.
Masahiko TerakadoMedicinal Chemistry Research Laboratories, Ono Pharmaceutical Co., Ltd., Osaka 618-8585, Japan.
Haruto KurataMedicinal Chemistry Research Laboratories, Ono Pharmaceutical Co., Ltd., Osaka 618-8585, Japan.
Rie OmiMedicinal Chemistry Research Laboratories, Ono Pharmaceutical Co., Ltd., Osaka 618-8585, Japan.
Yasuyuki KiharaDepartment of Molecular and Cellular Neuroscience, Dorris Neuroscience Center, The Scripps Research Institute, La Jolla, CA 92037, USA.
Dora WarshaviakSchrödinger Inc., 120 West 45th Street, New York, NY 10036, USA.
Shinji NakadeExploratory Research Laboratories, Ono Pharmaceutical Co., Ltd., Ibaraki 300-4247, Japan.
Guillermo Asmar-RoviraDepartment of Structural Discovery, Receptos, San Diego, CA 92121, USA.
Mauro MileniDepartment of Structural Discovery, Receptos, San Diego, CA 92121, USA.
Hirotaka MizunoDepartment of Molecular and Cellular Neuroscience, Dorris Neuroscience Center, The Scripps Research Institute, La Jolla, CA 92037, USA; Exploratory Research Laboratories, Ono Pharmaceutical Co., Ltd., Ibaraki 300-4247, Japan.
Mark T GriffithDepartment of Structural Discovery, Receptos, San Diego, CA 92121, USA.
Caroline RodgersDepartment of Structural Discovery, Receptos, San Diego, CA 92121, USA.
Gye Won HanDepartments of Biological Sciences and Chemistry, Bridge Institute, University of Southern California, Los Angeles, Los Angeles, CA 90089, USA.
Jeffrey VelasquezDepartments of Biological Sciences and Chemistry, Bridge Institute, University of Southern California, Los Angeles, Los Angeles, CA 90089, USA.
Jerold ChunDepartment of Molecular and Cellular Neuroscience, Dorris Neuroscience Center, The Scripps Research Institute, La Jolla, CA 92037, USA.
Raymond C StevensDepartments of Biological Sciences and Chemistry, Bridge Institute, University of Southern California, Los Angeles, Los Angeles, CA 90089, USA; iHuman Institute, ShanghaiTech University, 2F Building 6, 99 Haike Road, Pudong New District, Shanghai, 201210, China.
Michael A HansonDepartment of Structural Discovery, Receptos, San Diego, CA 92121, USA. Electronic address: mhanson@gpcrconsortium.org.

Funding

Project 3U54GM094618 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI STEVENS, RAYMOND C · 2010 to 2014
$17.1M
RECEPTOR-MEDIATED LPA SIGNALING IN CORTICAL DEVELOPMENTR01MH051699 · NIMH · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI CHUN, JEROLD · 2001 to 2009
$3.3M
Prenatal blood-borne lipids in post-hemorrhagic hydrocephalusR01NS084398 · NINDS · SCRIPPS RESEARCH INSTITUTE, THE · PI CHUN, JEROLD · 2014 to 2017
$2.6M
Lysophospholipid mechanisms in congenital hydrocephalusR56NS082092 · NINDS · SCRIPPS RESEARCH INSTITUTE, THE · PI CHUN, JEROLD · 2012 to 2012
$649k
CELL LINES FOR FINDING DEVELOPMENTAL NEOCORTICAL GENESR29MH051699 · NIMH · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI CHUN, JEROLD · 1994 to 1998
–
NCI NIH HHS Y01 CO001020NIGMS NIH HHS U54 GM094618NIGMS NIH HHS Y01 GM001104NIMH NIH HHS MH051699NIMH NIH HHS R01 MH051699NINDS NIH HHS NS082092NINDS NIH HHS NS084398NINDS NIH HHS R01 NS084398NINDS NIH HHS R56 NS082092
6 · The paper itself

Abstract

Lipid biology continues to emerge as an area of significant therapeutic interest, particularly as the result of an enhanced understanding of the wealth of signaling molecules with diverse physiological properties. This growth in knowledge is epitomized by lysophosphatidic acid (LPA), which functions through interactions with at least six cognate G protein-coupled receptors. Herein, we present three crystal structures of LPA1 in complex with antagonist tool compounds selected and designed through structural and stability analyses. Structural analysis combined with molecular dynamics identified a basis for ligand access to the LPA1 binding pocket from the extracellular space contrasting with the proposed access for the sphingosine 1-phosphate receptor. Characteristics of the LPA1 binding pocket raise the possibility of promiscuous ligand recognition of phosphorylated endocannabinoids. Cell-based assays confirmed this hypothesis, linking the distinct receptor systems through metabolically related ligands with potential functional and therapeutic implications for treatment of disease.

Indexed as

Crystallography, X-RayBinding SitesChromatography, GelHumansLigandsModels, MolecularReceptors, Lysophosphatidic AcidReceptors, LysosphingolipidSmall Molecule LibrariesLigandsReceptors, Lysophosphatidic AcidReceptors, LysosphingolipidSmall Molecule Libraries

Identifiers

PMID26091040
PMCPMC4476059

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.