Evidence map›Paper›PMID 26090851›Full record

ArticlePloS one2015

New Nuclear SNP Markers Unravel the Genetic Structure and Effective Population Size of Albacore Tuna (Thunnus alalunga).

Urtzi Laconcha, Mikel Iriondo, Haritz Arrizabalaga, Carmen Manzano, Pablo Markaide, Iratxe Montes, Iratxe Zarraonaindia, Igor Velado, Eider Bilbao, Nicolas Goñi and 5 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
5.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 49 citations in OpenAlex.

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  19. Large-scale genetic panmixia in the blue shark (Evolutionary applications · 2018
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 2 countries.

Urtzi LaconchaAZTI, Marine Research Division, Herrera Kaia Portualdea z/g, Pasaia (Gipuzkoa), Spain; Department of Genetics, Physical Anthropology and Animal Physiology, University of the Basque Country (UPV/EHU), Sarriena auzoa z/g, Leioa (Bizkaia), Spain.
Mikel IriondoDepartment of Genetics, Physical Anthropology and Animal Physiology, University of the Basque Country (UPV/EHU), Sarriena auzoa z/g, Leioa (Bizkaia), Spain.
Haritz ArrizabalagaAZTI, Marine Research Division, Herrera Kaia Portualdea z/g, Pasaia (Gipuzkoa), Spain.
Carmen ManzanoDepartment of Genetics, Physical Anthropology and Animal Physiology, University of the Basque Country (UPV/EHU), Sarriena auzoa z/g, Leioa (Bizkaia), Spain.
Pablo MarkaideDepartment of Genetics, Physical Anthropology and Animal Physiology, University of the Basque Country (UPV/EHU), Sarriena auzoa z/g, Leioa (Bizkaia), Spain.
Iratxe MontesDepartment of Genetics, Physical Anthropology and Animal Physiology, University of the Basque Country (UPV/EHU), Sarriena auzoa z/g, Leioa (Bizkaia), Spain.
Iratxe ZarraonaindiaDepartment of Genetics, Physical Anthropology and Animal Physiology, University of the Basque Country (UPV/EHU), Sarriena auzoa z/g, Leioa (Bizkaia), Spain.
Igor VeladoDepartment of Genetics, Physical Anthropology and Animal Physiology, University of the Basque Country (UPV/EHU), Sarriena auzoa z/g, Leioa (Bizkaia), Spain.
Eider BilbaoCell Biology & Environmental Toxicology Research Group, Research Centre for Experimental Marine Biology & Biotechnology (PIE) & Department of Zoology & Animal Cell Biology, University of the Basque Country (UPV/EHU), Sarriena auzoa z/g, Leioa (Bizkaia), Spain.
Nicolas GoñiAZTI, Marine Research Division, Herrera Kaia Portualdea z/g, Pasaia (Gipuzkoa), Spain.
Josu SantiagoAZTI, Marine Research Division, Txatxarramendi Ugartea z/g, Sukarrieta (Bizkaia), Spain.
Andrés DomingoLaboratory of Pelagic Resources, Dirección Nacional de Recursos Acuáticos (DINARA), Constituyente 1497, Montevideo, Uruguay.
Saadet KarakulakFisheries Faculty of Istanbul University, Laleli, Istanbul, Turkey.
Işık OrayFisheries Faculty of Istanbul University, Laleli, Istanbul, Turkey.
Andone EstonbaDepartment of Genetics, Physical Anthropology and Animal Physiology, University of the Basque Country (UPV/EHU), Sarriena auzoa z/g, Leioa (Bizkaia), Spain.
University of the Basque Country · ESIstanbul University · TRMarine Technology Unit · ESInstituto de Investigacións Mariñas · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the present study we have investigated the population genetic structure of albacore (Thunnus alalunga, Bonnaterre 1788) and assessed the loss of genetic diversity, likely due to overfishing, of albacore population in the North Atlantic Ocean. For this purpose, 1,331 individuals from 26 worldwide locations were analyzed by genotyping 75 novel nuclear SNPs. Our results indicated the existence of four genetically homogeneous populations delimited within the Mediterranean Sea, the Atlantic Ocean, the Indian Ocean and the Pacific Ocean. Current definition of stocks allows the sustainable management of albacore since no stock includes more than one genetic entity. In addition, short- and long-term effective population sizes were estimated for the North Atlantic Ocean albacore population, and results showed no historical decline for this population. Therefore, the genetic diversity and, consequently, the adaptive potential of this population have not been significantly affected by overfishing.

Indexed as

Genetics, PopulationGenetic StructuresPolymorphism, Single NucleotideAnimalsCluster AnalysisEvolution, MolecularGenetic VariationGenotypeGeographyTuna

Identifiers

PMID26090851
PMCPMC4474438
OpenAlexW840036572

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.