Evidence map›Paper›PMID 26090813›Full record

ArticlePloS one2015

Alteration of the Microbiota and Virulence Gene Expression in E. coli O157:H7 in Pig Ligated Intestine with and without AE Lesions.

Bianfang Liu, Xianhua Yin, Hai Yu, Yanni Feng, Xin Ying, Joshua Gong, Carlton L Gyles

Open access · goldAbstract readComparative Study
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. ABToxins · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Bianfang LiuCollege of Food Science and Engineering, Northwest A&F University, Yangling, Shaanxi Province, P. R. China.
Xianhua YinGuelph Food Research Centre, Agriculture and Agri-Food Canada, Guelph, Ontario, Canada.
Hai YuGuelph Food Research Centre, Agriculture and Agri-Food Canada, Guelph, Ontario, Canada.
Yanni FengCollege of Animal Science and Technology, Qingdao Agricultural University, Qingdao, P. R. China.
Xin YingChina National Cereals, Oils and Foodstuff s Corporation, Beijing, P. R. China.
Joshua GongGuelph Food Research Centre, Agriculture and Agri-Food Canada, Guelph, Ontario, Canada.
Carlton L GylesDepartment of Pathobiology, Ontario Veterinary College, University of Guelph, Guelph, Ontario, Canada.
Agriculture and Agri-Food Canada · CANorthwest A&F University · CNQingdao Agricultural University · CNUniversity of Guelph · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPreviously we found that E. coli O157:H7 inoculated into ligated pig intestine formed attaching and effacing (AE) lesions in some pigs but not in others. The present study evaluated changes in the microbial community and in virulence gene expression in E. coli O157:H7 in ligated pig intestine in which the bacteria formed AE lesions or failed to form AE lesions. METHODOLOGY/PRINCIPAL

findingsThe intestinal microbiota was assessed by RNA-based denaturing gradient gel electrophoresis (DGGE) analysis. The DGGE banding patterns showed distinct differences involving two bands which had increased intensity specifically in AE-negative pigs (AE- bands) and several bands which were more abundant in AE-positive pigs. Sequence analysis revealed that the two AE- bands belonged to Veillonella caviae, a species with probiotic properties, and Bacteroides sp. Concurrent with the differences in microbiota, gene expression analysis by quantitative PCR showed that, compared with AE negative pigs, E. coli O157:H7 in AE positive pigs had upregulated genes for putative adhesins, non-LEE encoded nleA and quorum sensing qseF, acid resistance gene ureD, and genes from the locus of enterocyte effacement (LEE). CONCLUSIONS/SIGNIFICANCE: The present study demonstrated that AE-positive pigs had reduced activities or populations of Veillonella caviae and Bacterioides sp. compared with AE-negative pigs. Further studies are required to understand how the microbiota was changed and the role of these organisms in the control of E. coli O157:H7.

Indexed as

Adhesins, Escherichia coliAnimalsDNA-Binding ProteinsEscherichia coli InfectionsEscherichia coli O157Escherichia coli ProteinsFemaleGene ExpressionGene Expression Regulation, BacterialIleumLigationMicrobiotaSus scrofaUp-RegulationVirulenceAdhesins, Escherichia coliDNA-Binding ProteinsEscherichia coli ProteinsQseF protein, E coli

Identifiers

PMID26090813
PMCPMC4474639
OpenAlexW1515497701

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.