Evidence map›Paper›PMID 26090726›Full record

ArticleJournal of the American Chemical Society2015

Molecular-Level Insight into the Differential Oxidase and Oxygenase Reactivities of de Novo Due Ferri Proteins.

Rae Ana Snyder, Susan E Butch, Amanda J Reig, William F DeGrado, Edward I Solomon

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 27 citations in OpenAlex.

  1. Review
  2. Catalysis and Electron Transfer inChemical reviews · 2022
    Review
  3. Review
  4. Allosteric cooperation in a de novo-designed two-domain protein.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  5. A de novo peroxidase is also a promiscuous yet stereoselective carbene transferase.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  6. Article
  7. The ascent of man(made oxidoreductases).Current opinion in structural biology · 2018
    Review
  8. Article
  9. Review
  10. Antimicrobial activity of a porphyrin binding peptide.Peptide science (Hoboken, N.J.) · 2018
    Article
  11. Article
  12. Design of artificial metalloproteins/metalloenzymes by tuning noncovalent interactions.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2018
    Review
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Rae Ana Snyder†Department of Chemistry, Stanford University, Stanford, California 94305, United States.
Susan E Butch‡Department of Chemistry, Ursinus College, Collegeville, Pennsylvania 19426, United States.
Amanda J Reig‡Department of Chemistry, Ursinus College, Collegeville, Pennsylvania 19426, United States.
William F DeGrado⊥Department of Pharmaceutical Chemistry, University of California, San Francisco, California 94143, United States.
Edward I Solomon†Department of Chemistry, Stanford University, Stanford, California 94305, United States.
Stanford University · USUrsinus College · USUniversity of California, San Francisco · US

Funding

De novo design of alpha-helical bundlesR37GM054616 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI DEGRADO, WILLIAM · 2004 to 2013
$3.6M
DE NOVO DESIGN OF ALPHA HELICAL BUNDLESR01GM054616 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI DEGRADO, WILLIAM · 1996 to 2016
$2.4M
Charge-Transfer Dynamics Relevant to Protein-Mediated Energy TransductionR01GM071628 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI THERIEN, MICHAEL J · 2004 to 2014
$2.3M
Using De Novo Protein Models to Understand Functional Tuning in Di-Iron CarboxylaR15GM110657 · NIGMS · URSINUS COLLEGE · PI REIG, AMANDA · 2014 to 2014
$222k
NIGMS NIH HHS F32-GM808852NIGMS NIH HHS GM54616NIGMS NIH HHS GM71628NIGMS NIH HHS R01 GM054616NIGMS NIH HHS R01 GM071628NIGMS NIH HHS R15 GM110657NIGMS NIH HHS R15-GM110657NIGMS NIH HHS R37 GM054616
6 · The paper itself

Abstract

Using the single-chain due ferri (DFsc) peptide scaffold, the differential oxidase and oxygenase reactivities of two 4A→4G variants, one with two histidines at the diiron center (G4DFsc) and the other with three histidines (3His-G4DFsc(Mut3)), are explored. By controlling the reaction conditions, the active form responsible for 4-aminophenol (4-AP) oxidase activity in both G4DFsc and 3His-G4DFsc(Mut3) is determined to be the substrate-bound biferrous site. Using circular dichroism (CD), magnetic CD (MCD), and variable-temperature, variable-field (VTVH) MCD spectroscopies, 4-AP is found to bind directly to the biferrous sites of the DF proteins. In G4DFsc, 4-AP increases the coordination of the biferrous site, while in 3His-G4DFsc(Mut3), the coordination number remains the same and the substrate likely replaces the additional bound histidine. This substrate binding enables a two-electron process where 4-AP is oxidized to benzoquinone imine and O2 is reduced to H2O2. In contrast, only the biferrous 3His variant is found to be active in the oxygenation of p-anisidine to 4-nitroso-methoxybenzene. From CD, MCD, and VTVH MCD, p-anisidine addition is found to minimally perturb the biferrous centers of both G4DFsc and 3His-G4DFsc(Mut3), indicating that this substrate binds near the biferrous site. In 3His-G4DFsc(Mut3), the coordinative saturation of one iron leads to the two-electron reduction of O2 at the second iron to generate an end-on hydroperoxo-Fe(III) active oxygenating species.

Indexed as

HistidineIronKineticsModels, MolecularOxidoreductasesOxygenasesPeptidesProtein Structure, SecondaryHistidineIronOxidoreductasesOxygenasesPeptides

Identifiers

PMID26090726
PMCPMC4843592
OpenAlexW2467802767

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.