Evidence map›Paper›PMID 26089392›Full record

ArticleNucleic acids research2015

Functional VEGFA knockdown with artificial 3'-tailed mirtrons defined by 5' splice site and branch point.

Kian Hong Kock, Kiat Whye Kong, Shawn Hoon, Yiqi Seow

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Kian Hong KockMolecular Engineering Laboratory, Biomedical Medical Sciences Institutes, 61 Biopolis Drive Proteos #03-13 Singapore 138673.
Kiat Whye KongMolecular Engineering Laboratory, Biomedical Medical Sciences Institutes, 61 Biopolis Drive Proteos #03-13 Singapore 138673.
Shawn HoonMolecular Engineering Laboratory, Biomedical Medical Sciences Institutes, 61 Biopolis Drive Proteos #03-13 Singapore 138673 School of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore 637551.
Yiqi SeowMolecular Engineering Laboratory, Biomedical Medical Sciences Institutes, 61 Biopolis Drive Proteos #03-13 Singapore 138673 seowy@bmsi.a-star.edu.sg.ORCID http://orcid.org/0000-0001-7040-3006
Institute of Medical Biology · SGNanyang Technological University · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mirtrons are introns that form pre-miRNA hairpins after splicing to produce RNA interference (RNAi) effectors distinct from Drosha-dependent intronic miRNAs, and will be especially useful for co-delivery of coding genes and RNAi. A specific family of mirtrons - 3'-tailed mirtrons - has hairpins precisely defined on the 5' end by the 5' splice site and 3' end by the branch point. Here, we present design principles for artificial 3'-tailed mirtrons and demonstrate, for the first time, efficient gene knockdown with tailed mirtrons within eGFP coding region. These artificial tailed mirtrons, unlike canonical mirtrons, have very few sequence design restrictions. Tailed mirtrons targeted against VEGFA mRNA, the misregulation of which is causative of several disorders including cancer, achieved significant levels of gene knockdown. Tailed mirtron-mediated knockdown was further shown to be splicing-dependent, and at least as effective as equivalent artificial intronic miRNAs, with the added advantage of very defined cleavage sites for generation of mature miRNA guide strands. Further development and exploitation of this unique mirtron biogenesis pathway for therapeutic RNAi coupled into protein-expressing genes can potentially enable the development of precisely controlled combinatorial gene therapy.

Indexed as

Gene Knockdown TechniquesIntronsRNA InterferenceRNA Splice SitesHEK293 CellsHumansMicroRNAsRNA SplicingVascular Endothelial Growth Factor AMicroRNAsRNA Splice SitesVascular Endothelial Growth Factor AVEGFA protein, human

Identifiers

PMID26089392
PMCPMC4513878
OpenAlexW1672075211

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.