Evidence map›Paper›PMID 26088449›Full record

ArticleTumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine2015

Influence of functional polymorphisms in TNF-α, IL-8, and IL-10 cytokine genes on mRNA expression levels and risk of gastric cancer.

Juliana Garcia de Oliveira, Ana Flávia Teixeira Rossi, Daniela Manchini Nizato, Aline Cristina Targa Cadamuro, Yvana Cristina Jorge, Marina Curado Valsechi, Larissa Paola Rodrigues Venâncio, Paula Rahal, Érika Cristina Pavarino, Eny Maria Goloni-Bertollo and 1 more

Abstract read
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In one paragraph

Article in Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers, 6 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed, 6 pooled it
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 6 syntheses or guidelines pooled it, 71 citations in OpenAlex.

  1. Association of theGenetics research · 2022
    Pooled it
  2. Associations between genetic polymorphisms inCancer biology & therapy · 2020
    Pooled it
  3. Pooled it
  4. Pooled it
  5. Genetic association betweenOncotarget · 2017
    Pooled it
  6. Tumor Necrosis Factor-Disease markers · 2016
    Pooled it
  7. Trial
  8. Review
  9. Differential expression ofVeterinary world · 2025
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  15. Article
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  18. Association between tumor necrosis factor alpha and lymphotoxin alpha gene polymorphisms and migraine occurrence among Jordanians.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2021
    Article
  19. Association betweenGenes · 2021
    Article
  20. Frontiers in neuroscience · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Juliana Garcia de OliveiraCytogenetics and Molecular Biology Laboratory, Department of Biology, Sao Paulo State University (UNESP), Rua Cristovão Colombo, 2265, São José do Rio Preto, 15054-000, SP, Brazil. juliana.usc2012@yahoo.com.br.
Ana Flávia Teixeira RossiCytogenetics and Molecular Biology Laboratory, Department of Biology, Sao Paulo State University (UNESP), Rua Cristovão Colombo, 2265, São José do Rio Preto, 15054-000, SP, Brazil. rossi.anaflavia@gmail.com.
Daniela Manchini NizatoDepartment of Genetics and Molecular Biology, São José do Rio Preto School of Medicine (FAMERP), Av. Brigadeiro Faria Lima, 5416, São José do Rio Preto, 15090-000, SP, Brazil. danymanchini@hotmail.com.
Aline Cristina Targa CadamuroCytogenetics and Molecular Biology Laboratory, Department of Biology, Sao Paulo State University (UNESP), Rua Cristovão Colombo, 2265, São José do Rio Preto, 15054-000, SP, Brazil. ctc.aline@gmail.com.
Yvana Cristina JorgeCytogenetics and Molecular Biology Laboratory, Department of Biology, Sao Paulo State University (UNESP), Rua Cristovão Colombo, 2265, São José do Rio Preto, 15054-000, SP, Brazil. yvanacj@hotmail.com.
Marina Curado ValsechiGenomics Laboratory, Department of Biology, Sao Paulo State University (UNESP), Rua Cristovão Colombo, 2265, São José do Rio Preto, 15054-000, SP, Brazil. mcvalsechi@hotmail.com.
Larissa Paola Rodrigues VenâncioLaboratory for the Study of Hemoglobin and the Genetics of Hematologic Diseases, Department of Biology, Sao Paulo State University (UNESP), Rua Cristovão Colombo, 2265, São José do Rio Preto, 15054-000, SP, Brazil. larissa.bluerose@gmail.com.
Paula RahalGenomics Laboratory, Department of Biology, Sao Paulo State University (UNESP), Rua Cristovão Colombo, 2265, São José do Rio Preto, 15054-000, SP, Brazil. prahal@ibilce.unesp.br.
Érika Cristina PavarinoDepartment of Genetics and Molecular Biology, São José do Rio Preto School of Medicine (FAMERP), Av. Brigadeiro Faria Lima, 5416, São José do Rio Preto, 15090-000, SP, Brazil. erika@famerp.br.
Eny Maria Goloni-BertolloDepartment of Genetics and Molecular Biology, São José do Rio Preto School of Medicine (FAMERP), Av. Brigadeiro Faria Lima, 5416, São José do Rio Preto, 15090-000, SP, Brazil. eny.goloni@famerp.br.
Ana Elizabete SilvaCytogenetics and Molecular Biology Laboratory, Department of Biology, Sao Paulo State University (UNESP), Rua Cristovão Colombo, 2265, São José do Rio Preto, 15054-000, SP, Brazil. anabete@ibilce.unesp.br.
Universidade Estadual Paulista (Unesp) · BRFaculdade de Medicina de São José do Rio Preto · BRSacred Heart University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Functional polymorphisms in promoter regions can produce changes in the affinity of transcription factors, thus altering the messenger ribonucleic acid (mRNA) expression levels of inflammatory cytokines associated with the risk of cancer development. The goal of this study was to evaluate the influence that polymorphisms in the cytokine genes known as TNF-α-308 G/A (rs1800629), TNF-α-857 C/T (rs1799724), IL-8-251 T/A (rs4073), IL-8-845 T/C (rs2227532), and IL-10-592 C/A (rs1800872) have on changes to mRNA expression levels and on the risks of chronic gastritis (CG) and gastric cancer (GC). A sample of 723 individuals was genotyped using the polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) technique. Relative mRNA expression levels were measured using quantitative real-time PCR (qPCR). Polymorphisms TNF-α-308 G/A and IL-8-251 A/T were not associated with risks of these gastric lesions. However, TNF-α-857 C/T, IL-8-845 T/C, and IL-10-592 C/A were found to be associated with a higher risk of GC, and IL-10-592 C/A was found to be associated with a higher risk of CG. The relative mRNA expression levels (RQ) of TNF-α, IL-8, and IL-10 were markedly downregulated in the CG group (median RQs = 0.128, 0.247, and 0.614, respectively), while the RQ levels of TNF-α in the GC group were upregulated (RQ = 2.749), but were basal for IL-8 (RQ = 1.053) and downregulated for IL-10 (RQ = 0.179). When the groups were stratified according to wild-type and polymorphic alleles, only for IL-8-845 T/C the polymorphic allele was found to influence the expression levels of this cytokine. IL-8-845 C allele carriers were significantly upregulated in both groups (GC and CG; RQ = 3.138 and 2.181, respectively) when compared to TT homozygotes (RQ = -0.407 and 0.165, respectively). In silico analysis in the IL-8 promoter region revealed that the presence of the variant C allele in position -845 is responsible for the presence of the binding sites for two transcription factors (REL and CREB1), which are involved in increased gene expression. Polymorphic alleles were not shown to have any effect on the expression levels of TNF-α and IL-10. Taken together, our findings provide evidence for an association of TNF-α-857 C/T, IL-8-845 T/C, and IL-10-592 C/A with a higher risk of gastric cancer and also demonstrate the influence that the polymorphic C allele of IL-8-845 has on changes to the gene expression levels of this cytokine.

Indexed as

AdultAgedAged, 80 and overAllelesFemaleGastritisGene Expression Regulation, NeoplasticGenetic Predisposition to DiseaseGenotypeHelicobacter pyloriHumansInterleukin-10Interleukin-8MaleMiddle AgedPolymorphism, Single NucleotideIL10 protein, humanInterleukin-10Interleukin-8RNA, MessengerTumor Necrosis Factor-alphaChronic gastritisCytokinesGastric cancerGene expressionGene polymorphisms

Identifiers

PMID26088449
OpenAlexW632168117

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.