Evidence map›Paper›PMID 26085575›Full record

ArticleHuman molecular genetics2015

AluY-mediated germline deletion, duplication and somatic stem cell reversion in UBE2T defines a new subtype of Fanconi anemia.

Elizabeth L Virts, Anna Jankowska, Craig Mackay, Marcel F Glaas, Constanze Wiek, Stephanie L Kelich, Nadine Lottmann, Felicia M Kennedy, Christophe Marchal, Erik Lehnert and 22 more

Open access · hybridAbstract read
In one paragraph

Article in Human molecular genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed, 1 pooled it
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 1 synthesis or guideline pooled it, 64 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Ubiquitin-conjugating Enzymes in Cancer.International journal of biological sciences · 2026
    Review
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. The Fanconi Anemia Pathway in Cancer.Annual review of cancer biology · 2019
    Article
  20. PALB2 (partner and localizer of BRCA2).Atlas of genetics and cytogenetics in oncology and haematology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors at 10 institutions in 4 countries.

Elizabeth L VirtsDepartment of Pediatrics and.
Anna JankowskaDepartment of Pediatrics and.
Craig MackayDepartment of MRC Protein Phosphorylation and Ubiquitylation Unit, College of Life Sciences, University of Dundee, Dundee, UK.
Marcel F GlaasDepartment of Otorhinolaryngology and Head/Neck Surgery (ENT) and.
Constanze WiekDepartment of Otorhinolaryngology and Head/Neck Surgery (ENT) and.
Stephanie L KelichDepartment of Pediatrics and.
Nadine LottmannDepartment of Otorhinolaryngology and Head/Neck Surgery (ENT) and.
Felicia M KennedyDepartment of Pediatrics and.
Christophe MarchalDepartment of Pediatrics and.
Erik LehnertDepartment of Experimental and Clinical Hemostasis, Hemotherapy and Transfusion Medicine, Heinrich Heine University, Düsseldorf, Germany.
Rüdiger E ScharfDepartment of Experimental and Clinical Hemostasis, Hemotherapy and Transfusion Medicine, Heinrich Heine University, Düsseldorf, Germany.
Carlo DufourHematology Unit, G. Gaslini Children's Hospital, Genoa, Italy.
Marina LanciottiHematology Unit, G. Gaslini Children's Hospital, Genoa, Italy.
Piero FarruggiaPediatric Hematology and Oncology Unit, A.R.N.A.S. Ospedale Civico, Palermo, Italy.
Alessandra SantoroA.O. Ospedali Riuniti Villa Sofia-Cervello, Palermo, Italy.
Süreyya SavasanDepartment of Pediatrics, Children's Hospital of Michigan, Wayne State University School of Medicine, Detroit, MI, USA.
Kathrin ScheckenbachDepartment of Otorhinolaryngology and Head/Neck Surgery (ENT) and.
Jörg SchipperDepartment of Otorhinolaryngology and Head/Neck Surgery (ENT) and.
Martin WagenmannDepartment of Otorhinolaryngology and Head/Neck Surgery (ENT) and.
Todd LewisDepartment of Biochemistry and Molecular Biology, Boonshoft School of Medicine, Wright State University, Dayton, OH 45435, USA.
Michael LeffakDepartment of Biochemistry and Molecular Biology, Boonshoft School of Medicine, Wright State University, Dayton, OH 45435, USA.
Janice L FarlowMedical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, IN 46202, USA.
Tatiana M ForoudMedical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, IN 46202, USA.
Ellen HonischDepartment of Gynecology, Heinrich Heine University, Düsseldorf, Germany and.
Dieter NiederacherDepartment of Gynecology, Heinrich Heine University, Düsseldorf, Germany and.
Sujata C ChakrabortyMedical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, IN 46202, USA.
Gail H VanceMedical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, IN 46202, USA.
Dmitry PrussMyriad Genetics Inc., Salt Lake City, UT, USA.
Kirsten M TimmsMyriad Genetics Inc., Salt Lake City, UT, USA.
Jerry S LanchburyMyriad Genetics Inc., Salt Lake City, UT, USA.
Arno F AlpiDepartment of MRC Protein Phosphorylation and Ubiquitylation Unit, College of Life Sciences, University of Dundee, Dundee, UK, hhanenbe@iu.edu a.f.alpi@dundee.ac.uk.
Helmut HanenbergDepartment of Pediatrics and Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, IN 46202, USA, Department of Otorhinolaryngology and Head/Neck Surgery (ENT) and hhanenbe@iu.edu a.f.alpi@dundee.ac.uk.
Heinrich Heine University Düsseldorf · DEIndiana University – Purdue University Indianapolis · USMyriad Genetics · USIndiana University School of MedicineIstituto Giannina Gaslini · ITWright State University · USChildren's Hospital of Michigan · USMRC Protein Phosphorylation and Ubiquitylation Unit · GBOspedale Vincenzo Cervello · ITUniversity of Dundee · GB

Funding

Quality Assurance and Quality Control Project Management: Improving Submissions and Study Conduct in the Human Subjects Research Prior Approval ProcessUL1TR002529 · NCATS · INDIANA UNIVERSITY INDIANAPOLIS · PI MOE, SHARON M, WIEHE, SARAH ELIZABETH · 2018 to 2022
$27.2M
Indiana Clinical and Translational Sciences InstituteUL1TR001108 · NCATS · INDIANA UNIVERSITY INDIANAPOLIS · PI DENNE, SCOTT C., SHEKHAR, ANANTHA · 2013 to 2017
$23.3M
Genetic Therapy for Fanconi AnemiaR01CA155294 · NCI · INDIANA UNIVERSITY INDIANAPOLIS · PI CLAPP, DAVID W, HANENBERG, HELMUT · 2011 to 2015
$1.6M
NCATS NIH HHS UL1 TR001108NCI NIH HHS R01 CA155294NCI NIH HHS R01 CA155294-01Wellcome TrustWellcome Trust 097945/B/11/Z
6 · The paper itself

Abstract

Fanconi anemia (FA) is a rare inherited disorder clinically characterized by congenital malformations, progressive bone marrow failure and cancer susceptibility. At the cellular level, FA is associated with hypersensitivity to DNA-crosslinking genotoxins. Eight of 17 known FA genes assemble the FA E3 ligase complex, which catalyzes monoubiquitination of FANCD2 and is essential for replicative DNA crosslink repair. Here, we identify the first FA patient with biallelic germline mutations in the ubiquitin E2 conjugase UBE2T. Both mutations were aluY-mediated: a paternal deletion and maternal duplication of exons 2-6. These loss-of-function mutations in UBE2T induced a cellular phenotype similar to biallelic defects in early FA genes with the absence of FANCD2 monoubiquitination. The maternal duplication produced a mutant mRNA that could encode a functional protein but was degraded by nonsense-mediated mRNA decay. In the patient's hematopoietic stem cells, the maternal allele with the duplication of exons 2-6 spontaneously reverted to a wild-type allele by monoallelic recombination at the duplicated aluY repeat, thereby preventing bone marrow failure. Analysis of germline DNA of 814 normal individuals and 850 breast cancer patients for deletion or duplication of UBE2T exons 2-6 identified the deletion in only two controls, suggesting aluY-mediated recombinations within the UBE2T locus are rare and not associated with an increased breast cancer risk. Finally, a loss-of-function germline mutation in UBE2T was detected in a high-risk breast cancer patient with wild-type BRCA1/2. Cumulatively, we identified UBE2T as a bona fide FA gene (FANCT) that also may be a rare cancer susceptibility gene.

Indexed as

Germ-Line MutationAdolescentAdultAllelesBreast NeoplasmsChildChild, PreschoolChromosome BreakageDNA DamageExonsFanconi AnemiaFanconi Anemia Complementation Group D2 ProteinFemaleFibroblastsGene DeletionGene DuplicationFanconi Anemia Complementation Group D2 ProteinRNA, MessengerUBE2T protein, humanUbiquitin-Conjugating Enzymes

Identifiers

PMID26085575
PMCPMC4550815
OpenAlexW1924945038

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.