ArticleMolecular genetics and genomics : MGG2016
repRNA: a web server for generating various feature vectors of RNA sequences.
Article in Molecular genetics and genomics : MGG, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.
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Who cites it
66 citing papers in PubMed.
- Machine Learning for RNA-Targeting Drug Design.Journal of chemical information and modeling · 2026Review
- SeqHIVE: a Python package to convert the biological sequences to informative vectors for sequence property predictions.BioData mining · 2026Article
- Predicting circRNA subcellular localization by fusing circRNA sequence and network information.Scientific reports · 2026Article
- From nucleotides to numbers: a comprehensive review of RNA feature extraction methods for computational modelling.Briefings in bioinformatics · 2025Review
- Reliable method for predicting the binding affinity of RNA-small molecule interactions using machine learning.Briefings in bioinformatics · 2024Article
- iFeatureOmega: an integrative platform for engineering, visualization and analysis of features from molecular sequences, structural and ligand data sets.Nucleic acids research · 2022Article
- Multi-feature Fusion Method Based on Linear Neighborhood Propagation Predict Plant LncRNA-Protein Interactions.Interdisciplinary sciences, computational life sciences · 2022Article
- MathFeature: feature extraction package for DNA, RNA and protein sequences based on mathematical descriptors.Briefings in bioinformatics · 2022Article
- XGEM: Predicting Essential miRNAs by the Ensembles of Various Sequence-Based Classifiers With XGBoost Algorithm.Frontiers in genetics · 2022Article
- PSSMCOOL: a comprehensive R package for generating evolutionary-based descriptors of protein sequences from PSSM profiles.Biology methods & protocols · 2022Article
- Identification of stress response proteins through fusion of machine learning models and statistical paradigms.Scientific reports · 2021Article
- Structure-aware machine learning identifies microRNAs operating as Toll-like receptor 7/8 ligands.RNA biology · 2021Article
- Identification of Human Secretome and Membrane Proteome-Based Cancer Biomarkers Utilizing Bioinformatics.The Journal of membrane biology · 2020Article
- A Brief Survey for MicroRNA Precursor Identification Using Machine Learning Methods.Current genomics · 2020Review
- Selecting Essential MicroRNAs Using a Novel Voting Method.Molecular therapy. Nucleic acids · 2019Article
- iProt-Sub: a comprehensive package for accurately mapping and predicting protease-specific substrates and cleavage sites.Briefings in bioinformatics · 2019Review
- Adaboost-SVM-based probability algorithm for the prediction of all mature miRNA sites based on structured-sequence features.Scientific reports · 2019Article
- Article
- Sequence-based bacterial small RNAs prediction using ensemble learning strategies.BMC bioinformatics · 2018Article
- SFPEL-LPI: Sequence-based feature projection ensemble learning for predicting LncRNA-protein interactions.PLoS computational biology · 2018Article
6 more citing papers are in PubMed but not listed here.
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Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
With the rapid growth of RNA sequences generated in the postgenomic age, it is highly desired to develop a flexible method that can generate various kinds of vectors to represent these sequences by focusing on their different features. This is because nearly all the existing machine-learning methods, such as SVM (support vector machine) and KNN (k-nearest neighbor), can only handle vectors but not sequences. To meet the increasing demands and speed up the genome analyses, we have developed a new web server, called "representations of RNA sequences" (repRNA). Compared with the existing methods, repRNA is much more comprehensive, flexible and powerful, as reflected by the following facts: (1) it can generate 11 different modes of feature vectors for users to choose according to their investigation purposes; (2) it allows users to select the features from 22 built-in physicochemical properties and even those defined by users' own; (3) the resultant feature vectors and the secondary structures of the corresponding RNA sequences can be visualized. The repRNA web server is freely accessible to the public at http://bioinformatics.hitsz.edu.cn/repRNA/ .
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26085220What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.