Evidence map›Paper›PMID 26085142›Full record

ArticleJournal of virology2015

Structure of the C-Terminal Domain of the Multifunctional ICP27 Protein from Herpes Simplex Virus 1.

Vidhi Patel, Sue-Li Dahlroth, Venkatachalam Rajakannan, Hai Ting Ho, Tobias Cornvik, Pär Nordlund

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 20 citations in OpenAlex.

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  16. Herpes simplex virus ICP27 regulates alternative pre-mRNA polyadenylation and splicing in a sequence-dependent manner.Proceedings of the National Academy of Sciences of the United States of America · 2016
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Vidhi PatelStructural Biology and Biochemistry Division, Nanyang Technological University, Singapore.ORCID http://orcid.org/0000-0002-7352-2657
Sue-Li DahlrothStructural Biology and Biochemistry Division, Nanyang Technological University, Singapore.
Venkatachalam RajakannanStructural Biology and Biochemistry Division, Nanyang Technological University, Singapore.
Hai Ting HoStructural Biology and Biochemistry Division, Nanyang Technological University, Singapore.
Tobias CornvikStructural Biology and Biochemistry Division, Nanyang Technological University, Singapore.
Pär NordlundStructural Biology and Biochemistry Division, Nanyang Technological University, Singapore Institute of Molecular and Cell Biology, A*STAR, Singapore Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden pnordlund@ntu.edu.sg.
Nanyang Technological University · SGAgency for Science, Technology and Research · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

unlabelledHerpesviruses are nuclear-replicating viruses that have successfully evolved to evade the immune system of humans, establishing lifelong infections. ICP27 from herpes simplex virus is a multifunctional regulatory protein that is functionally conserved in all known human herpesviruses. It has the potential to interact with an array of cellular proteins, as well as intronless viral RNAs. ICP27 plays an essential role in viral transcription, nuclear export of intronless RNAs, translation of viral transcripts, and virion host shutoff function. It has also been implicated in several signaling pathways and the prevention of apoptosis. Although much is known about its central role in viral replication and infection, very little is known about the structure and mechanistic properties of ICP27 and its homologs. We present the first crystal structure of ICP27 C-terminal domain at a resolution of 2.0 Å. The structure reveals the C-terminal half of ICP27 to have a novel fold consisting of α-helices and long loops, along with a unique CHCC-type of zinc-binding motif. The two termini of this domain extend from the central core and hint to possibilities of making interactions. ICP27 essential domain is capable of forming self-dimers as seen in the structure, which is confirmed by analytical ultracentrifugation study. Preliminary in vitro phosphorylation assays reveal that this domain may be regulated by cellular kinases. IMPORTANCE: ICP27 is a key regulatory protein of the herpes simplex virus and has functional homologs in all known human herpesviruses. Understanding the structure of this protein is a step ahead in deciphering the mechanism by which the virus thrives. In this study, we present the first structure of the C-terminal domain of ICP27 and describe its novel features. We critically analyze the structure and compare our results to the information available form earlier studies. This structure can act as a guide in future experimental designs and can add to a better understanding of mechanism of ICP27, as well as that of its homologs.

Indexed as

Amino Acid SequenceCloning, MolecularCrystallography, X-RayHerpesvirus 1, HumanHydrophobic and Hydrophilic InteractionsImmediate-Early ProteinsMolecular Sequence DataPhosphorylationProtein BindingProtein FoldingProtein Structure, TertiaryRNA, ViralSequence AlignmentTranscription, GeneticViral ProteinsZincICP27 protein, human herpesvirus 1Immediate-Early ProteinsRNA, ViralViral ProteinsZinc

Identifiers

PMID26085142
PMCPMC4524066
OpenAlexW2110521743

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.