Evidence map›Paper›PMID 26085102›Full record

ArticleThe Journal of biological chemistry2015

A Three-protein Charge Zipper Stabilizes a Complex Modulating Bacterial Gene Silencing.

Tiago N Cordeiro, Jesús García, Pau Bernadó, Oscar Millet, Miquel Pons

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

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  13. An oxygen-sensitive toxin-antitoxin system.Nature communications · 2016
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 2 countries.

Tiago N CordeiroFrom the Biomolecular NMR Laboratory, Department of Organic Chemistry, University of Barcelona, 08028 Barcelona, Spain, Centre de Biochimie Structurale, INSERM U1054, CNRS UMR 5048, Université Montpellier 1 and 2, 34092 Montpellier, France.
Jesús GarcíaInstitute for Research in Biomedicine (IRB-Barcelona), 08028 Barcelona, Spain, and.
Pau BernadóCentre de Biochimie Structurale, INSERM U1054, CNRS UMR 5048, Université Montpellier 1 and 2, 34092 Montpellier, France.
Oscar Milletthe Structural Biology Unit, Center for Cooperative Research in Biosciences (CIC-bioGUNE), 48160 Elexalde, Derio, Spain omillet@cicbiogune.es.
Miquel PonsFrom the Biomolecular NMR Laboratory, Department of Organic Chemistry, University of Barcelona, 08028 Barcelona, Spain, mpons@ub.edu.
Universitat de Barcelona · ESCentre de Biologie Structurale · FRCIC bioGUNE · ESInstitute for Research in Biomedicine · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Hha/YmoA nucleoid-associated proteins help selectively silence horizontally acquired genetic material, including pathogenicity and antibiotic resistance genes and their maintenance in the absence of selective pressure. Members of the Hha family contribute to gene silencing by binding to the N-terminal dimerization domain of H-NS and modifying its selectivity. Hha-like proteins and the H-NS N-terminal domain are unusually rich in charged residues, and their interaction is mostly electrostatic-driven but, nonetheless, highly selective. The NMR-based structural model of the complex between Hha/YmoA and the H-NS N-terminal dimerization domain reveals that the origin of the selectivity is the formation of a three-protein charge zipper with interdigitated complementary charged residues from Hha and the two units of the H-NS dimer. The free form of YmoA shows collective microsecond-millisecond dynamics that can by measured by NMR relaxation dispersion experiments and shows a linear dependence with the salt concentration. The number of residues sensing the collective dynamics and the population of the minor form increased in the presence of H-NS. Additionally, a single residue mutation in YmoA (D43N) abolished H-NS binding and the dynamics of the apo-form, suggesting the dynamics and binding are functionally related.

Indexed as

Gene Expression Regulation, BacterialGene Transfer, HorizontalAmino Acid SequenceBacterial ProteinsDNA-Binding ProteinsEnterobacteriaceaeEnterobacteriaceae InfectionsHumansModels, MolecularMolecular Sequence DataNuclear Magnetic Resonance, BiomolecularProtein ConformationProtein Interaction MapsProtein MultimerizationStatic ElectricityBacterial ProteinsDNA-Binding Proteinscharge zipper complexeselectrostaticsgene silencinghorizontal gene transfernuclear magnetic resonance (NMR)nucleoid-associated proteinsprotein dynamicprotein-protein interaction

Identifiers

PMID26085102
PMCPMC4571853
OpenAlexW1953002935

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.