ArticleScientific reports2015
Molecular organization and comparative analysis of chromosome 5B of the wild wheat ancestor Triticum dicoccoides.
Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed.
- Fine structure and transcription dynamics of bread wheat ribosomal DNA loci deciphered by a multi-omics approach.The plant genome · 2022Article
- Flow karyotyping of wheat-Frontiers in plant science · 2022Article
- Pan-Genome miRNomics inPlants (Basel, Switzerland) · 2021Article
- Chromosome analysis and sorting.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2021Review
- Capture of complete ciliate chromosomes in single sequencing reads reveals widespread chromosome isoforms.BMC genomics · 2019Article
- Salinity-associated microRNAs and their potential roles in mediating salt tolerance in rice colonized by the endophytic root fungus Piriformospora indica.Functional & integrative genomics · 2019Article
- Dissecting the Complex Genome of Crested Wheatgrass by Chromosome Flow Sorting.The plant genome · 2019Article
- Hotspots in the genomic architecture of field drought responses in wheat as breeding targets.Functional & integrative genomics · 2019Article
- Differential Expression of MicroRNAs During Root Formation inOpen life sciences · 2019Article
- Chromosome-based survey sequencing reveals the genome organization of wild wheat progenitor Triticum dicoccoides.Plant biotechnology journal · 2018Article
- A large-scale multiomics analysis of wheat stem solidness and the wheat stem sawfly feeding response, and syntenic associations in barley, Brachypodium, and rice.Functional & integrative genomics · 2018Article
- Genetic Contribution of Emmer Wheat (Frontiers in plant science · 2018Article
- Complete chloroplast genome sequence and comparative analysis of loblolly pine (Pinus taeda L.) with related species.PloS one · 2018Article
- Mapping QTLs conferring salt tolerance and micronutrient concentrations at seedling stagein wheat.Scientific reports · 2017Article
- High-throughput SNP genotyping of modern and wild emmer wheat for yield and root morphology using a combined association and linkage analysis.Functional & integrative genomics · 2017Article
- Transcriptome-based SNP discovery by GBS and the construction of a genetic map for olive.Functional & integrative genomics · 2017Article
- Wheat miRNA ancestors: evident by transcriptome analysis of A, B, and D genome donors.Functional & integrative genomics · 2017Article
- A large-scale chromosome-specific SNP discovery guideline.Functional & integrative genomics · 2017Article
- DNApod: DNA polymorphism annotation database from next-generation sequence read archives.PloS one · 2017Article
- Dissecting miRNAs in Wheat D Genome Progenitor, Aegilops tauschii.Frontiers in plant science · 2016Article
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7 authors.
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No grant is acknowledged in the PubMed record.
Abstract
Wild emmer wheat, Triticum turgidum ssp. dicoccoides is the wild relative of Triticum turgidum, the progenitor of durum and bread wheat, and maintains a rich allelic diversity among its wild populations. The lack of adequate genetic and genomic resources, however, restricts its exploitation in wheat improvement. Here, we report next-generation sequencing of the flow-sorted chromosome 5B of T. dicoccoides to shed light into its genome structure, function and organization by exploring the repetitive elements, protein-encoding genes and putative microRNA and tRNA coding sequences. Comparative analyses with its counterparts in modern and wild wheats suggest clues into the B-genome evolution. Syntenic relationships of chromosome 5B with the model grasses can facilitate further efforts for fine-mapping of traits of interest. Mapping of 5B sequences onto the root transcriptomes of two additional T. dicoccoides genotypes, with contrasting drought tolerances, revealed several thousands of single nucleotide polymorphisms, of which 584 shared polymorphisms on 228 transcripts were specific to the drought-tolerant genotype. To our knowledge, this study presents the largest genomics resource currently available for T. dicoccoides, which, we believe, will encourage the exploitation of its genetic and genomic potential for wheat improvement to meet the increasing demand to feed the world.
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