Evidence map›Paper›PMID 26084049›Full record

ArticleInternational journal of molecular sciences2015

Enzymatic Synthesis of Galactosylated Serine/Threonine Derivatives by β-Galactosidase from Escherichia coli.

Sooyoun Seo, Joseph Rebehmed, Alexandre G de Brevern, Salwa Karboune

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.3field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 4 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Sooyoun SeoDepartment of Food Science and Agricultural Chemistry, McGill University, 21,111 Lakeshore, Ste Anne de Bellevue, QC H9X-3V9, Canada. sooyoun.seo@mail.mcgill.ca.
Joseph RebehmedINSERM UMR_S 1134, Dynamique des Structures et Interactions des Macromolécules Biologiques (DSIMB), University Paris Diderot, Sorbonne Paris Cité, INTS, Laboratory of excellence, GR-Ex, 6, rue Alexandre Cabanel, 75739 Paris Cedex 15, France. joseph.rebehmed@univ-paris-diderot.fr.
Alexandre G de BrevernINSERM UMR_S 1134, Dynamique des Structures et Interactions des Macromolécules Biologiques (DSIMB), University Paris Diderot, Sorbonne Paris Cité, INTS, Laboratory of excellence, GR-Ex, 6, rue Alexandre Cabanel, 75739 Paris Cedex 15, France. alexandre.debrevern@univ-paris-diderot.fr.
Salwa KarbouneDepartment of Food Science and Agricultural Chemistry, McGill University, 21,111 Lakeshore, Ste Anne de Bellevue, QC H9X-3V9, Canada. salwa.karboune@mcgill.ca.
Inserm · FRMcGill University · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The transgalactosylations of serine/threonine derivatives were investigated using β-galactosidase from Escherichia coli as biocatalyst. Using ortho-nitrophenyl-β-D-galactoside as donor, the highest bioconversion yield of transgalactosylated N-carboxy benzyl L-serine benzyl ester (23.2%) was achieved in heptane:buffer medium (70:30), whereas with the lactose, the highest bioconversion yield (3.94%) was obtained in the buffer reaction system. The structures of most abundant galactosylated serine products were characterized by MS/MS. The molecular docking simulation revealed that the binding of serine/threonine derivatives to the enzyme's active site was stronger (-4.6~-7.9 kcal/mol) than that of the natural acceptor, glucose, and mainly occurred through interactions with aromatic residues. For N-tert-butoxycarbonyl serine methyl ester (6.8%) and N-carboxybenzyl serine benzyl ester (3.4%), their binding affinities and the distances between their hydroxyl side chain and the 1'-OH group of galactose moiety were in good accordance with the quantified bioconversion yields. Despite its lower predicted bioconversion yield, the high experimental bioconversion yield obtained with N-carboxybenzyl serine methyl ester (23.2%) demonstrated the importance of the thermodynamically-driven nature of the transgalactosylation reaction.

Indexed as

Biocatalysisbeta-GalactosidaseEscherichia coli ProteinsGalactoseMolecular Docking SimulationSerineThreoninebeta-GalactosidaseEscherichia coli ProteinsGalactoseSerineThreoninebinding affinitiesgalactosyl acceptormolecular dockingserine/threonine derivativestransgalactosylationβ-galactosidase

Identifiers

PMID26084049
PMCPMC4490519
OpenAlexW1569079426

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.