Evidence map›Paper›PMID 26083925›Full record

ArticleBiophysical journal2015

A Temperature-Jump Optical Trap for Single-Molecule Manipulation.

Sara de Lorenzo, Marco Ribezzi-Crivellari, J Ricardo Arias-Gonzalez, Steven B Smith, Felix Ritort

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 66 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Universal cold RNA phase transitions.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  7. Article
  8. Optical Tweezers to Study Viruses.Sub-cellular biochemistry · 2024
    Review
  9. Article
  10. Effect of temperature and nucleotide on the binding of BiP chaperone to a protein substrate.Protein science : a publication of the Protein Society · 2023
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Molten globule-like transition state of protein barnase measured with calorimetric force spectroscopy.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  16. Article
  17. Article
  18. Review
  19. Sugar-Pucker Force-Induced Transition in Single-Stranded DNA.International journal of molecular sciences · 2021
    Article
  20. Optical tweezers in single-molecule biophysics.Nature reviews. Methods primers · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Sara de LorenzoDepartament de Física Fonamental, Universitat de Barcelona, Barcelona, Spain; Ciber-BBN de Bioingenería, Biomateriales y Nanomedicina, Instituto de Salud Carlos III, Madrid, Spain.
Marco Ribezzi-CrivellariDepartament de Física Fonamental, Universitat de Barcelona, Barcelona, Spain.
J Ricardo Arias-GonzalezInstituto Madrileño de Estudios Avanzados en Nanociencia (IMDEA Nanociencia), Cantoblanco, Madrid, Spain; CNB-CSIC-IMDEA Nanociencia Associated Unit "Unidad de Nanobiotecnología", Madrid, Spain.
Steven B SmithSteven B. Smith Engineering, Los Lunas, New Mexico.
Felix RitortDepartament de Física Fonamental, Universitat de Barcelona, Barcelona, Spain; Ciber-BBN de Bioingenería, Biomateriales y Nanomedicina, Instituto de Salud Carlos III, Madrid, Spain. Electronic address: ritort@ffn.ub.es.
Universitat de Barcelona · ESInstituto de Salud Carlos III · ESMadrid Institute for Advanced Studies · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To our knowledge, we have developed a novel temperature-jump optical tweezers setup that changes the temperature locally and rapidly. It uses a heating laser with a wavelength that is highly absorbed by water so it can cover a broad range of temperatures. This instrument can record several force-distance curves for one individual molecule at various temperatures with good thermal and mechanical stability. Our design has features to reduce convection and baseline shifts, which have troubled previous heating-laser instruments. As proof of accuracy, we used the instrument to carry out DNA unzipping experiments in which we derived the average basepair free energy, entropy, and enthalpy of formation of the DNA duplex in a range of temperatures between 5°C and 50°C. We also used the instrument to characterize the temperature-dependent elasticity of single-stranded DNA (ssDNA), where we find a significant condensation plateau at low force and low temperature. Oddly, the persistence length of ssDNA measured at high force seems to increase with temperature, contrary to simple entropic models.

Indexed as

Hot TemperatureOptical TweezersBase PairingDNA, Single-StrandedElasticityOptical ImagingDNA, Single-Stranded

Identifiers

PMID26083925
PMCPMC4472040
OpenAlexW1937664581

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.