Evidence map›Paper›PMID 26083657›Full record

ArticleKidney international2015

Genome-wide association study of acute kidney injury after coronary bypass graft surgery identifies susceptibility loci.

Mark Stafford-Smith, Yi-Ju Li, Joseph P Mathew, Yen-Wei Li, Yunqi Ji, Barbara G Phillips-Bute, Carmelo A Milano, Mark F Newman, William E Kraus, Miklos D Kertai and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Kidney international, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 3 pooled it
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 3 syntheses or guidelines pooled it, 54 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Guideline
  4. Observational
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Multi-omic approaches to acute kidney injury and repair.Current opinion in biomedical engineering · 2021
    Article
  12. Genetic Susceptibility to Acute Kidney Injury.Journal of clinical medicine · 2021
    Review
  13. Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Review
  19. Precision Medicine and its Role in the Treatment of Sepsis: A Personalised View.Journal of critical care medicine (Universitatea de Medicina si Farmacie din Targu-Mures) · 2019
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Mark Stafford-SmithDepartment of Anesthesiology, Duke University Medical Center, Durham, North Carolina, USA.
Yi-Ju LiDepartment of Biostatistics and Bioinformatics, Duke University Medical Center, Durham, North Carolina, USA.
Joseph P MathewDepartment of Anesthesiology, Duke University Medical Center, Durham, North Carolina, USA.
Yen-Wei LiDepartment of Biostatistics and Bioinformatics, Duke University Medical Center, Durham, North Carolina, USA.
Yunqi JiDepartment of Biostatistics and Bioinformatics, Duke University Medical Center, Durham, North Carolina, USA.
Barbara G Phillips-ButeDepartment of Anesthesiology, Duke University Medical Center, Durham, North Carolina, USA.
Carmelo A MilanoDepartment of Anesthesiology, Duke University Medical Center, Durham, North Carolina, USA.
Mark F NewmanDepartment of Anesthesiology, Duke University Medical Center, Durham, North Carolina, USA.
William E KrausDuke Molecular Physiology Institute, Duke University Medical Center, Durham, North Carolina, USA.
Miklos D KertaiDepartment of Anesthesiology, Duke University Medical Center, Durham, North Carolina, USA.
Svati H ShahDuke Molecular Physiology Institute, Duke University Medical Center, Durham, North Carolina, USA.
Mihai V PodgoreanuDepartment of Anesthesiology, Duke University Medical Center, Durham, North Carolina, USA.
Duke Perioperative Genetics and Safety Outcomes (PEGASUS) Investigative Team
Duke Medical Center · USDuke University Hospital · USDuke University · US

Funding

XOMAZYME-CD5 PLUS THERAPY IN RHEUMATOID ARTHRITISM01RR000030 · NCRR · DUKE UNIVERSITY · PI WILLIAMS, R SANDERS · 1985 to 2006
$20.0M
Metabolomic Quantitative Trait Locus (mQTL) Genetic Mapping in Human CVDR01HL095987 · NHLBI · DUKE UNIVERSITY · PI SHAH, SVATI H. · 2009 to 2013
$3.4M
Genetics Myocardial Adverse Outcomes/Graft Failure-CABGR01HL075273 · NHLBI · DUKE UNIVERSITY · PI PODGOREANU, MIHAI V. · 2004 to 2008
$3.2M
Genetic Mediators of Metabolic Cardiovascular Disease RiskRC2HL101621 · NHLBI · DUKE UNIVERSITY · PI KRAUS, WILLIAM E · 2009 to 2010
$3.2M
PeriOperative Interventional Neuroprotection Trial-POINTR01HL069081 · NHLBI · DUKE UNIVERSITY · PI NEWMAN, MARK FRANKLIN · 2002 to 2006
$2.6M
Cross-species analysis of myocardial susceptibility to perioperative stressR01HL092071 · NHLBI · DUKE UNIVERSITY · PI PODGOREANU, MIHAI V. · 2007 to 2010
$1.9M
Lidocaine for Neuroprotection During Cardiac SurgeryR01HL096978 · NHLBI · DUKE UNIVERSITY · PI MATHEW, JOSEPH P · 2009 to 2013
$1.8M
GENETICS, INFLAMMATION &POST-OP COGNITIVE DYSFUNCTIONR01AG016762 · NIA · DUKE UNIVERSITY · PI NEWMAN, MARK FRANKLIN · 1999 to 2003
$1.6M
AGING AND COGNITION AFTER CARDIAC SURGERYR01AG009663 · NIA · DUKE UNIVERSITY · PI NEWMAN, MARK FRANKLIN · 1991 to 2003
$1.3M
Cortical Beta-amyloid Levels and Neurocognitive Performance After Cardiac SurgeryR21HL108280 · NHLBI · DUKE UNIVERSITY · PI MATHEW, JOSEPH P · 2011 to 2012
$432k
Functional Connectivity Changes In Attention Networks after Cardiac SurgeryR21HL109971 · NHLBI · DUKE UNIVERSITY · PI BROWNDYKE, JEFFREY N, MATHEW, JOSEPH P · 2012 to 2013
$422k
GENETIC BASIS OF COGNITIVE DECLINE AFTER SUGERYR01HL054316 · NHLBI · DUKE UNIVERSITY · PI NEWMAN, MARK FRANKLIN · 1997 to 2000
$261k
NCRR NIH HHS M01 RR000030NCRR NIH HHS M01-RR-30NHLBI NIH HHS HL054316NHLBI NIH HHS HL069081NHLBI NIH HHS HL075273NHLBI NIH HHS HL092071NHLBI NIH HHS HL095987NHLBI NIH HHS HL096978NHLBI NIH HHS HL101621NHLBI NIH HHS HL108280NHLBI NIH HHS HL109971NHLBI NIH HHS R01 HL069081NHLBI NIH HHS R01 HL075273NHLBI NIH HHS R01 HL092071NHLBI NIH HHS R01 HL095987NHLBI NIH HHS R01 HL096978NHLBI NIH HHS R21 HL108280NHLBI NIH HHS R21 HL109971NHLBI NIH HHS RC2 HL101621NIA NIH HHS AG09663NIA NIH HHS R01 AG016762
6 · The paper itself

Abstract

Acute kidney injury (AKI) is a common, serious complication of cardiac surgery. Since prior studies have supported a genetic basis for postoperative AKI, we conducted a genome-wide association study (GWAS) for AKI following coronary bypass graft (CABG) surgery. The discovery data set consisted of 873 nonemergent CABG surgery patients with cardiopulmonary bypass (PEGASUS), while a replication data set had 380 cardiac surgical patients (CATHGEN). Single-nucleotide polymorphism (SNP) data were based on Illumina Human610-Quad (PEGASUS) and OMNI1-Quad (CATHGEN) BeadChips. We used linear regression with adjustment for a clinical AKI risk score to test SNP associations with the postoperative peak rise relative to preoperative serum creatinine concentration as a quantitative AKI trait. Nine SNPs meeting significance in the discovery set were detected. The rs13317787 in GRM7|LMCD1-AS1 intergenic region (3p21.6) and rs10262995 in BBS9 (7p14.3) were replicated with significance in the CATHGEN data set and exhibited significantly strong overall association following meta-analysis. Additional fine mapping using imputed SNPs across these two regions and meta-analysis found genome-wide significance at the GRM7|LMCD1-AS1 locus and a significantly strong association at BBS9. Thus, through an unbiased GWAS approach, we found two new loci associated with post-CABG AKI providing new insights into the pathogenesis of perioperative AKI.

Indexed as

Genetic LociPolymorphism, Single NucleotideAcute Kidney InjuryAgedBiomarkersCoronary Artery BypassCreatinineDatabases, GeneticFemaleGenetic MarkersGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansLinear ModelsMaleMiddle AgedBiomarkersCreatinineGenetic Markers

Identifiers

PMID26083657
PMCPMC4589439
OpenAlexW1542233849

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.