Evidence map›Paper›PMID 26083631›Full record

ArticlePloS one2015

A Conserved Glycan in the C2 Domain of HIV-1 Envelope Acts as a Molecular Switch to Control X4 Utilization by Clonal Variants with Identical V3 Loops.

Francesca Lombardi, Kyle J Nakamura, Thomas Chen, Edwin R Sobrera, Nicole H Tobin, Grace M Aldrovandi

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Francesca LombardiDepartment of Pediatrics, Children's Hospital Los Angeles, Los Angeles, CA, United States of America.
Kyle J NakamuraDepartment of Pediatrics, Children's Hospital Los Angeles, Los Angeles, CA, United States of America.
Thomas ChenDepartment of Pediatrics, Children's Hospital Los Angeles, Los Angeles, CA, United States of America.
Edwin R SobreraDepartment of Pediatrics, Children's Hospital Los Angeles, Los Angeles, CA, United States of America.
Nicole H TobinDepartment of Pediatrics, Children's Hospital Los Angeles, Los Angeles, CA, United States of America.
Grace M AldrovandiDepartment of Pediatrics, Children's Hospital Los Angeles, Los Angeles, CA, United States of America.
Children's Hospital of Los Angeles · US

Funding

LOC-IMPAACT Leadership GroupPharmacokinetics and Safety of Remdesivir for Treatment of COVID-19 in Pregnant Women in the USUM1AI068632 · NIAID · SOCIAL AND SCIENTIFIC SYSTEMS, INC. · PI Jennifer Jao, Sharon A Nachman · 2011 to 2026
$278.1M
International Maternal Pediatric Adolescent AIDS Clinical Trials (IMPAACT) GroupU01AI068632 · NIAID · SOCIAL AND SCIENTIFIC SYSTEMS, INC. · PI JACKSON, J BROOKS · 2006 to 2010
$109.7M
Short Exclusive Breastfeeding to Reduce Postnatal Transmission of HIVR01HD039611 · NICHD · BOSTON UNIVERSITY MEDICAL CAMPUS · PI THEA, DONALD M · 2000 to 2006
$8.0M
Pathogenesis of Mother to Child Transmission of HIVR01HD040777 · NICHD · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI ALDROVANDI, GRACE M · 2002 to 2011
$4.4M
Safer Weaning Practices for HIV-infected womenR01HD057617 · NICHD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI KUHN, LOUISE · 2007 to 2011
$2.0M
NIAID NIH HHS AI 68632NIAID NIH HHS U01 AI068632NIAID NIH HHS U01 AI 68632NIAID NIH HHS UM1 AI068632NICHD NIH HHS R01 HD039611NICHD NIH HHS R01 HD040777NICHD NIH HHS R01 HD057617NICHD NIH HHS R01 HD 39611NICHD NIH HHS R01 HD 40777NICHD NIH HHS R01 HD 57617
6 · The paper itself

Abstract

Nearly all persons newly infected with HIV-1 harbor exclusively CCR5-using virus. CXCR4-using variants eventually arise in up to 50% of patients infected with subtypes B or D. This transition to efficient CXCR4 utilization is often co-incident with progression to AIDS. The basis for HIV-1's initial dependence on CCR5, the selective force(s) that drive CXCR4-utilization, and the evolutionary pathways by which it occurs are incompletely understood. Greater knowledge of these processes will inform interventions at all stages, from vaccination to cure. The determinants of co-receptor use map primarily, though not exclusively, to the V3 loop of gp120. In this study, we describe five clonal variants with identical V3 loops but divergent CXCR4 use. Mutagenesis revealed two residues controlling this phenotypic switch: a rare polymorphism in C1 and a highly conserved N-glycan in C2. To our knowledge, this is the first description of co-receptor usage regulated by the N-glycan at position 262.

Indexed as

Amino Acid SequenceGlycosylationHEK293 CellsHIV-1HIV Envelope Protein gp120HIV InfectionsHumansMannoseMolecular Sequence DataMutagenesis, Site-DirectedPeptide FragmentsPhenotypePolysaccharidesProtein Structure, TertiaryReceptors, CCR5Receptors, CXCR4HIV Envelope Protein gp120HIV envelope protein gp120 (305-321)MannosePeptide FragmentsPolysaccharidesReceptors, CCR5Receptors, CXCR4

Identifiers

PMID26083631
PMCPMC4471078
OpenAlexW2163328834

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.