Evidence map›Paper›PMID 26083500›Full record

ArticlePloS one2015

Control of Protein Activity and Cell Fate Specification via Light-Mediated Nuclear Translocation.

Hayretin Yumerefendi, Daniel J Dickinson, Hui Wang, Seth P Zimmerman, James E Bear, Bob Goldstein, Klaus Hahn, Brian Kuhlman

Abstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed.

  1. Review
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  3. Article
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  5. Article
  6. Characterizing Optogenetic Tools for Use in Synthetic Gene Circuits.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  7. Review
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  9. Article
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  15. Article
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  18. Review
  19. Analysis of the C. elegans Germline Stem Cell Pool.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  20. Article

7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Hayretin YumerefendiDepartment of Biochemistry and Biophysics, University of North Carolina, Chapel Hill, North Carolina, United States of America.
Daniel J DickinsonDepartment of Biology, University of North Carolina, Chapel Hill, North Carolina, United States of America; Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, North Carolina, United States of America.
Hui WangDepartment of Pharmacology, University of North Carolina, Chapel Hill, North Carolina, United States of America.
Seth P ZimmermanDepartment of Biochemistry and Biophysics, University of North Carolina, Chapel Hill, North Carolina, United States of America.
James E BearDepartment of Cell Biology & Physiology, University of North Carolina, Chapel Hill, North Carolina, United States of America; Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, North Carolina, United States of America.
Bob GoldsteinDepartment of Biology, University of North Carolina, Chapel Hill, North Carolina, United States of America; Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, North Carolina, United States of America.
Klaus HahnDepartment of Pharmacology, University of North Carolina, Chapel Hill, North Carolina, United States of America; Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, North Carolina, United States of America.
Brian KuhlmanDepartment of Biochemistry and Biophysics, University of North Carolina, Chapel Hill, North Carolina, United States of America; Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, North Carolina, United States of America.

Funding

Virology Research Program (Program 4)P30CA016086 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Deborah F. Tate · 1985 to 2026
$201.5M
Integrated Training in Cancer Model SystemsT32CA009156 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DER, CHANNING J. · 1985 to 2020
$19.7M
INTERACTIVE GRAPHICS FOR MOLECULAR STUDIES &MICROSCOPYP41EB002025 · NIBIB · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SUPERFINE, RICHARD · 2003 to 2019
$16.9M
Spatio-temporal dynamics of GEF-GTPase networksP01GM103723 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BURRIDGE, KEITH · 2013 to 2017
$5.5M
Mechanisms of C. elegans GastrulationR01GM083071 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI GOLDSTEIN, ROBERT P · 2008 to 2019
$3.7M
A toolkit for imaging and photo-manipulation of signaling in zebrafishR01GM102924 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI HAHN, KLAUS M., HUTTENLOCHER, ANNA · 2012 to 2015
$2.5M
Spatiotemporal Control of the Epigenome via Photoactivatable Nuclear LocalizationR01DA036877 · NIDA · UNIV OF NORTH CAROLINA CHAPEL HILL · PI HAHN, KLAUS M., KUHLMAN, BRIAN A · 2013 to 2017
$2.1M
Design of Genetically Encoded Photoactivatable ProteinsR01GM093208 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KUHLMAN, BRIAN A · 2010 to 2013
$1.1M
Howard Hughes Medical InstituteNCI NIH HHS T32 CA009156NCI NIH HHS T32CA009156NIBIB NIH HHS P41 EB002025NIDA NIH HHS R01 DA036877NIGMS NIH HHS P01 GM103723NIGMS NIH HHS R01 GM083071NIGMS NIH HHS R01 GM093208NIGMS NIH HHS R01 GM102924
6 · The paper itself

Abstract

Light-activatable proteins allow precise spatial and temporal control of biological processes in living cells and animals. Several approaches have been developed for controlling protein localization with light, including the conditional inhibition of a nuclear localization signal (NLS) with the Light Oxygen Voltage (AsLOV2) domain of phototropin 1 from Avena sativa. In the dark, the switch adopts a closed conformation that sterically blocks the NLS motif. Upon activation with blue light the C-terminus of the protein unfolds, freeing the NLS to direct the protein to the nucleus. A previous study showed that this approach can be used to control the localization and activity of proteins in mammalian tissue culture cells. Here, we extend this result by characterizing the binding properties of a LOV/NLS switch and demonstrating that it can be used to control gene transcription in yeast. Additionally, we show that the switch, referred to as LANS (light-activated nuclear shuttle), functions in the C. elegans embryo and allows for control of nuclear localization in individual cells. By inserting LANS into the C. elegans lin-1 locus using Cas9-triggered homologous recombination, we demonstrated control of cell fate via light-dependent manipulation of a native transcription factor. We conclude that LANS can be a valuable experimental method for spatial and temporal control of nuclear localization in vivo.

Indexed as

LightAmino Acid SequenceAnimalsAvenaCaenorhabditis elegansCaenorhabditis elegans ProteinsCell NucleusEmbryo, NonmammalianHeLa CellsHumansMicroscopy, ConfocalMolecular Sequence DataNuclear Localization SignalsPhototropinsPlant ProteinsProtein BindingCaenorhabditis elegans ProteinsLin-1 protein, C elegansNuclear Localization SignalsPhototropinsPlant ProteinsTranscription Factors

Identifiers

PMID26083500
PMCPMC4471001

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.