Evidence map›Paper›PMID 26082491›Full record

ArticleThe Journal of biological chemistry2015

Chitoporin from the Marine Bacterium Vibrio harveyi: PROBING THE ESSENTIAL ROLES OF TRP136 AT THE SURFACE OF THE CONSTRICTION ZONE.

Watcharin Chumjan, Mathias Winterhalter, Albert Schulte, Roland Benz, Wipa Suginta

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Watcharin ChumjanFrom the Biochemistry-Electrochemistry Research Unit, the School of Biochemistry, and.
Mathias Winterhalterthe Department of Life Sciences and Chemistry, Jacobs University Bremen, D-28759 Bremen, Germany m.winterhalter@jacobs-university.de.
Albert SchulteFrom the Biochemistry-Electrochemistry Research Unit, the School of Chemistry, Suranaree University of Technology, Nakhon Ratchasima 30000, Thailand and.
Roland Benzthe Department of Life Sciences and Chemistry, Jacobs University Bremen, D-28759 Bremen, Germany.
Wipa SugintaFrom the Biochemistry-Electrochemistry Research Unit, the School of Biochemistry, and wipa@sut.ac.th.
Suranaree University of Technology · THConstructor University · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

VhChiP is a sugar-specific porin present in the outer membrane of the marine bacterium Vibrio harveyi. VhChiP is responsible for the uptake of chitin oligosaccharides, with particular selectivity for chitohexaose. In this study, we employed electrophysiological and biochemical approaches to demonstrate that Trp(136), located at the mouth of the VhChiP pore, plays an essential role in controlling the channel's ion conductivity, chitin affinity, and permeability. Kinetic analysis of sugar translocation obtained from single channel recordings indicated that the Trp(136) mutations W136A, W136D, W136R, and W136F considerably reduce the binding affinity of the protein channel for its best substrate, chitohexaose. Liposome swelling assays confirmed that the Trp(136) mutations decreased the rate of bulk chitohexaose permeation through the VhChiP channel. Notably, all of the mutants show increases in the off-rate for chitohexaose of up to 20-fold compared with that of the native channel. Furthermore, the cation/anion permeability ratio Pc/Pa is decreased in the W136R mutant and increased in the W136D mutant. This demonstrates that the negatively charged surface at the interior of the protein lumen preferentially attracts cationic species, leading to the cation selectivity of this trimeric channel.

Indexed as

VibrioAmino Acid SequenceAmino Acid SubstitutionBacterial Outer Membrane ProteinsBinding SitesKineticsLiposomesMembrane PotentialsMolecular Sequence DataOligosaccharidesPermeabilityProtein BindingTryptophanBacterial Outer Membrane ProteinschitohexaoseLiposomesOligosaccharidesTryptophancarbohydrate-binding proteinchitinlipid bilayersingle molecule biophysicssugar transport

Identifiers

PMID26082491
PMCPMC4521040
OpenAlexW2247398408

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.