Evidence map›Paper›PMID 26082486›Full record

ArticleThe Journal of biological chemistry2015

Deoxyhypusine Modification of Eukaryotic Translation Initiation Factor 5A (eIF5A) Is Essential for Trypanosoma brucei Growth and for Expression of Polyprolyl-containing Proteins.

Suong Nguyen, Chrisopher Leija, Lisa Kinch, Sandesh Regmi, Qiong Li, Nick V Grishin, Margaret A Phillips

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Article
  3. Role of eIF5A in Mitochondrial Function.International journal of molecular sciences · 2022
    Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Polyamines in protozoan pathogens.The Journal of biological chemistry · 2018
    Review
  11. Article
  12. Article
  13. Article
  14. Ornithine uptake and the modulation of drug sensitivity inFASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2017
    Article
  15. Article
  16. The Major Protein Arginine Methyltransferase inThe Journal of biological chemistry · 2017
    Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Suong NguyenFrom the Departments of Pharmacology and.
Chrisopher LeijaFrom the Departments of Pharmacology and.
Lisa KinchBiophysics and Biochemistry and.
Sandesh RegmiFrom the Departments of Pharmacology and.
Qiong LiFrom the Departments of Pharmacology and.
Nick V GrishinBiophysics and Biochemistry and Howard Hughes Medical Institute, University of Texas Southwestern Medical Center, Dallas, Texas 75390-9041.
Margaret A PhillipsFrom the Departments of Pharmacology and margaret.phillips@UTSouthwestern.edu.
The University of Texas Southwestern Medical Center · USHoward Hughes Medical Institute · US

Funding

MECHANISMS OF DRUG ACTION AND DISPOSITIONT32GM007062 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI MANGELSDORF, DAVID J · 1985 to 2020
$7.4M
Polyamine and trypanothione metabolism in Trypanosoma bruceiR37AI034432 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI PHILLIPS, MARGARET A. · 2009 to 2018
$4.0M
Computational methods for structural-functional studies of proteinsR01GM094575 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI GRISHIN, NICK V. · 2010 to 2017
$2.4M
NIAID NIH HHS 2R37 AI034432NIAID NIH HHS R37 AI034432NIGMS NIH HHS GM007062NIGMS NIH HHS GM094575NIGMS NIH HHS R01 GM094575NIGMS NIH HHS T32 GM007062
6 · The paper itself

Abstract

The eukaryotic protozoan parasite Trypanosoma brucei is the causative agent of human African trypanosomiasis. Polyamine biosynthesis is essential in T. brucei, and the polyamine spermidine is required for synthesis of a novel cofactor called trypanothione and for deoxyhypusine modification of eukaryotic translation initiation factor 5A (eIF5A). eIF5A promotes translation of proteins containing polyprolyl tracts in mammals and yeast. To evaluate the function of eIF5A in T. brucei, we used RNA interference (RNAi) to knock down eIF5A levels and found that it is essential for T. brucei growth. The RNAi-induced growth defect was complemented by expression of wild-type human eIF5A but not by a Lys-50 mutant that blocks modification by deoxyhypusine. Bioinformatics analysis showed that 15% of the T. brucei proteome contains 3 or more consecutive prolines and that actin-related proteins and cysteine proteases were highly enriched in the group. Steady-state protein levels of representative proteins containing 9 consecutive prolines that are involved in actin assembly (formin and CAP/Srv2p) were significantly reduced by knockdown of eIF5A. Several T. brucei polyprolyl proteins are involved in flagellar assembly. Knockdown of TbeIF5A led to abnormal cell morphologies and detached flagella, suggesting that eIF5A is important for translation of proteins needed for these processes. Potential specialized functions for eIF5A in T. brucei in translation of variable surface glycoproteins were also uncovered. Inhibitors of deoxyhypusination would be expected to cause a pleomorphic effect on multiple cell processes, suggesting that deoxyhypusine/hypusine biosynthesis could be a promising drug target in not just T. brucei but in other eukaryotic pathogens.

Indexed as

Protein Processing, Post-TranslationalAmino Acid SequenceAnimalsEscherichia coliEukaryotic Translation Initiation Factor 5AFlagellaGene Knockdown TechniquesHumansLysineMicrofilament ProteinsMolecular Sequence DataPeptide Initiation FactorsPeptidesProteomeProtozoan ProteinsRecombinant ProteinsdeoxyhypusineEukaryotic Translation Initiation Factor 5ALysineMicrofilament ProteinsPeptide Initiation FactorsPeptidespolyprolineProteomeProtozoan ProteinsRecombinant ProteinsRNA-Binding ProteinsRNA, MessengerRNA, ProtozoanRNA, Small Interferingeukaryotic initiation factor 5A (eIF5A)hypusineparasite metabolismpolyaminespermidineTrypanosoma brucei

Identifiers

PMID26082486
PMCPMC4528157
OpenAlexW2277117704

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.