Evidence map›Paper›PMID 26082096›Full record

ArticleEvolution; international journal of organic evolution2015

A genomic selection component analysis characterizes migration-selection balance.

Patrick J Monnahan, Jack Colicchio, John K Kelly

Abstract read
In one paragraph

Article in Evolution; international journal of organic evolution, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Genomic Signatures of Environmental Adaptation inPlants (Basel, Switzerland) · 2025
    Article
  3. Defining fitness in evolutionary ecology.International journal of plant sciences · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Supergene potential of a selfish centromere.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Article
  9. Article
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  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Patrick J MonnahanDepartment of Ecology and Evolutionary Biology, University of Kansas, Lawrence, Kansas, 66045.
Jack ColicchioDepartment of Ecology and Evolutionary Biology, University of Kansas, Lawrence, Kansas, 66045.
John K KellyDepartment of Ecology and Evolutionary Biology, University of Kansas, Lawrence, Kansas, 66045. jkk@ku.edu.

Funding

Mentoring CoreP20GM103418 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI Douglas E Wright · 2012 to 2026
$63.0M
Genomic Analysis of Complex Trait Variation in MimulusR01GM073990 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI KELLY, JOHN K · 2006 to 2015
$2.6M
NIGMS NIH HHS P20 GM103418NIGMS NIH HHS R01 GM073990NIGMS NIH HHS R01GM073990
6 · The paper itself

Abstract

The genetic differentiation of populations in response to local selection pressures has long been studied by evolutionary biologists, but key details about the process remain obscure. How rapidly can local adaptation evolve, how extensive is the process across the genome, and how strong are the opposing forces of natural selection and gene flow? Here, we combine direct measurement of survival and reproduction with whole-genome genotyping of a plant species (Mimulus guttatus) that has recently invaded a novel habitat (the Quarry population). We renovate the classic selection component method to accommodate genomic data and observe selection at SNPs throughout the genome. SNPs showing viability selection in Quarry exhibit elevated divergence from neighboring populations relative to neutral SNPs. We also find that nonsignificant SNPs exhibit a subtle, but still significant, change in allele frequency toward neighboring populations, a predicted effect of gene flow. Given that the Quarry population is most probably only 30-40 generations old, the alleles conferring local advantage are almost certainly older than the population itself. Thus, local adaptation owes to the recruitment of standing genetic variation.

Indexed as

Gene FlowGenome, PlantPolymorphism, Single NucleotideSelection, GeneticAdaptation, BiologicalEcosystemGenotypeMimulusOregonPlant DispersalAdaptationmigrationmimulusRADseqselection

Identifiers

PMID26082096
PMCPMC4774264

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.