Evidence map›Paper›PMID 26078964›Full record

ArticleBioMed research international2015

Transcriptome Analysis of the Carmine Spider Mite, Tetranychus cinnabarinus (Boisduval, 1867) (Acari: Tetranychidae), and Its Response to β-Sitosterol.

Chunya Bu, Jinling Li, Xiao-Qin Wang, Guanglu Shi, Bo Peng, Jingyu Han, Pin Gao, Younian Wang

Open access · hybridAbstract read
In one paragraph

Article in BioMed research international, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
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  3. Combinational Effect ofBioMed research international · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Chunya BuCollege of Biological Science and Engineering, Beijing University of Agriculture, Beijing 102206, China ; Key Laboratory of Urban Agriculture (North), Ministry of Agriculture, Beijing 102206, China.
Jinling LiPlant Science and Technology College, Beijing University of Agriculture, Beijing 102206, China.
Xiao-Qin WangCollege of Biological Science and Engineering, Beijing University of Agriculture, Beijing 102206, China ; Key Laboratory of Urban Agriculture (North), Ministry of Agriculture, Beijing 102206, China.
Guanglu ShiCollege of Biological Science and Engineering, Beijing University of Agriculture, Beijing 102206, China ; Key Laboratory of Urban Agriculture (North), Ministry of Agriculture, Beijing 102206, China.
Bo PengPlant Science and Technology College, Beijing University of Agriculture, Beijing 102206, China.
Jingyu HanPlant Science and Technology College, Beijing University of Agriculture, Beijing 102206, China.
Pin GaoPlant Science and Technology College, Beijing University of Agriculture, Beijing 102206, China.
Younian WangCollege of Biological Science and Engineering, Beijing University of Agriculture, Beijing 102206, China ; Key Laboratory of Urban Agriculture (North), Ministry of Agriculture, Beijing 102206, China.
Beijing University of Agriculture · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tetranychus cinnabarinus (Acari: Tetranychidae) is a worldwide polyphagous agricultural pest that has the title of resistance champion among arthropods. We reported previously the identification of the acaricidal compound β-sitosterol from Mentha piperita and Inula japonica. However, the acaricidal mechanism of β-sitosterol is unclear. Due to the limited genetic research carried out, we de novo assembled the transcriptome of T. cinnabarinus using Illumina sequencing and conducted a differential expression analysis of control and β-sitosterol-treated mites. In total, we obtained >5.4 G high-quality bases for each sample with unprecedented sequencing depth and assembled them into 22,941 unigenes. We identified 617 xenobiotic metabolism-related genes involved in detoxification, binding, and transporting of xenobiotics. A highly expanded xenobiotic metabolic system was found in mites. T. cinnabarinus detoxification genes-including carboxyl/cholinesterase and ABC transporter class C-were upregulated after β-sitosterol treatment. Defense-related proteins, such as Toll-like receptor, legumain, and serine proteases, were also activated. Furthermore, other important genes-such as the chloride channel protein, cytochrome b, carboxypeptidase, peritrophic membrane chitin binding protein, and calphostin-may also play important roles in mites' response to β-sitosterol. Our results demonstrate that high-throughput-omics tool facilitates identification of xenobiotic metabolism-related genes and illustration of the acaricidal mechanisms of β-sitosterol.

Indexed as

AnimalsGene Expression RegulationInsecticidesInsect ProteinsSitosterolsTetranychidaeTranscriptomegamma-sitosterolInsecticidesInsect ProteinsSitosterols

Identifiers

PMID26078964
PMCPMC4442410
OpenAlexW1520079681

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.