Evidence map›Paper›PMID 26078445›Full record

ArticleJournal of bacteriology2015

YjjQ Represses Transcription of flhDC and Additional Loci in Escherichia coli.

Helene Wiebe, Doreen Gürlebeck, Jana Groß, Katrin Dreck, Derk Pannen, Christa Ewers, Lothar H Wieler, Karin Schnetz

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 22 citations in OpenAlex.

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  6. Avian PathogenicPathogens (Basel, Switzerland) · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Helene WiebeInstitute for Genetics, University of Cologne, Cologne, Germany.
Doreen GürlebeckCenter for Infection Medicine, Institute of Microbiology and Epizootics, Freie Universität Berlin, Berlin, Germany.
Jana GroßInstitute for Genetics, University of Cologne, Cologne, Germany.
Katrin DreckInstitute for Genetics, University of Cologne, Cologne, Germany.
Derk PannenInstitute for Genetics, University of Cologne, Cologne, Germany.
Christa EwersInstitute for Hygiene and Infectious Diseases of Animals, Justus-Liebig-Universität Giessen, Giessen, Germany.
Lothar H WielerCenter for Infection Medicine, Institute of Microbiology and Epizootics, Freie Universität Berlin, Berlin, Germany Robert Koch Institute, Berlin, Germany.
Karin SchnetzInstitute for Genetics, University of Cologne, Cologne, Germany schnetz@uni-koeln.de.
University of Cologne · DEFreie Universität Berlin · DEUniversity of Giessen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

unlabelledThe presumptive transcriptional regulator YjjQ has been identified as being virulence associated in avian pathogenic Escherichia coli (APEC). In this work, we characterize YjjQ as transcriptional repressor of the flhDC operon, encoding the master regulator of flagellar synthesis, and of additional loci. The latter include gfc (capsule 4 synthesis), ompC (outer membrane porin C), yfiRNB (regulated c-di-GMP synthesis), and loci of poorly defined function (ybhL and ymiA-yciX). We identify the YjjQ DNA-binding sites at the flhDC and gfc promoters and characterize a DNA-binding sequence motif present at all promoters found to be repressed by YjjQ. At the flhDC promoter, the YjjQ DNA-binding site overlaps the RcsA-RcsB DNA-binding site. RcsA-RcsB likewise represses the flhDC promoter, but the repression by YjjQ and that by RcsA-RcsB are independent of each other. These data suggest that YjjQ is an additional regulator involved in the complex control of flhDC at the level of transcription initiation. Furthermore, we show that YjjQ represses motility of the E. coli K-12 laboratory strain and of uropathogenic E. coli (UPEC) strains CFT073 and 536. Regulation of flhDC, yfiRNB, and additional loci by YjjQ may be features relevant for pathogenicity. IMPORTANCE: Escherichia coli is a commensal and pathogenic bacterium causing intra- and extraintestinal infections in humans and farm animals. The pathogenicity of E. coli strains is determined by their particular genome content, which includes essential and associated virulence factors that control the cellular physiology in the host environment. However, the gene pools of commensal and pathogenic E. coli are not clearly differentiated, and the function of virulence-associated loci needs to be characterized. In this study, we characterize the function of yjjQ, encoding a transcription regulator that was identified as being virulence associated in avian pathogenic E. coli (APEC). We characterize YjjQ as transcriptional repressor of flagellar motility and of additional loci related to pathogenicity.

Indexed as

Gene Expression Regulation, BacterialGenetic LociTranscription, GeneticDNA-Binding ProteinsEpigenetic RepressionEscherichia coliEscherichia coli ProteinsOperonPromoter Regions, GeneticTranscription FactorsVirulence FactorsDNA-Binding ProteinsEscherichia coli ProteinsTranscription FactorsVirulence FactorsYjjQ protein, E coli

Identifiers

PMID26078445
PMCPMC4507341
OpenAlexW1541190673

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.