Evidence map›Paper›PMID 26077888›Full record

ArticleJournal of periodontal research2016

Immune system transcriptome in gingival tissues of young nonhuman primates.

O A Gonzalez, R Nagarajan, M J Novak, L Orraca, J A Gonzalez-Martinez, S S Kirakodu, J L Ebersole

Open access · greenAbstract read
In one paragraph

Article in Journal of periodontal research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

O A GonzalezCenter for Oral Health Research, College of Dentistry, University of Kentucky, Lexington, KY, USA.
R NagarajanDivision of Biomedical Informatics, College of Public Health, University of Kentucky, Lexington, KY, USA.
M J NovakCenter for Oral Health Research, College of Dentistry, University of Kentucky, Lexington, KY, USA.
L OrracaSchool of Dentistry, University of Puerto Rico, San Juan, Puerto Rico.
J A Gonzalez-MartinezCaribbean Primate Research Center, Sabana Seca, Puerto Rico.
S S KirakoduCenter for Oral Health Research, College of Dentistry, University of Kentucky, Lexington, KY, USA.
J L EbersoleCenter for Oral Health Research, College of Dentistry, University of Kentucky, Lexington, KY, USA.
University of Kentucky · USCaribbean University · PRUniversity of Puerto Rico System · PR

Funding

Translational Research at the CPRC:genetic model of primate circadian disorderP40RR003640 · NCRR · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI KRAISELBURD, EDMUNDO NELSON · 1987 to 2011
$21.1M
Kentucky Center for Clinical and Translational ScienceUL1TR000117 · NCATS · UNIVERSITY OF KENTUCKY · PI KERN, PHILIP A · 2012 to 2015
$13.3M
OHPP Oral Health Pilot Program P30GM110788 · NIGMS · UNIVERSITY OF KENTUCKY · PI EBERSOLE, JEFFREY L · 2014 to 2018
$5.4M
Center for the Biologic Basis of Oral/Systemic Disease (CBBOSD)P20GM103538 · NIGMS · UNIVERSITY OF KENTUCKY · PI EBERSOLE, JEFFREY L · 2012 to 2013
$4.2M
NCATS NIH HHS UL1 TR000117NCATS NIH HHS UL1TR000117NCRR NIH HHS P40 RR003640NCRR NIH HHS P40RR03640NIGMS NIH HHS P20 GM103538NIGMS NIH HHS P20GM103538NIGMS NIH HHS P30 GM110788
6 · The paper itself

Abstract

BACKGROUND AND

objectiveYoung/adolescent humans harbor many microorganisms associated with periodontal disease in adults and show substantial gingival inflammatory responses. However, younger individuals do not demonstrate the soft- and hard-tissue destruction that hallmark periodontitis. MATERIAL AND

methodsThis study evaluated responses to the oral microbial ecology in gingival tissues from clinically healthy young Macaca mulatta (< 3 years of age) compared with older animals (5-23 years of age). RNA was isolated from the tissues and analyzed for the transcriptome using the Rhesus Macaque GeneChip (Affymetrix).

resultsGlobal transcriptional profiling of four age groups revealed a subset of 159 genes that were differentially expressed across at least one of the age comparisons. Correlation metrics generated a relevance network abstraction of these genes. Partitioning of the relevance network revealed seven distinct communities comprising functionally related genes associated with host inflammatory and immune responses. A group of genes was identified that were selectively increased/decreased or positively/negatively correlated with gingival profiles in the animals. A principal components analysis created metagenes of expression profiles for classifying the 23 animals.

conclusionThe results provide novel system-level insights into gene-expression differences in gingival tissues from healthy young animals, weighted toward host responses associated with anti-inflammatory biomolecules or those linked with T-cell regulation of responses. The combination of the regulated microenvironment may help to explain the apparent 'resistance' of younger individuals to developing periodontal disease.

Indexed as

GingivaAnimalsImmune SystemMacaca mulattaOligonucleotide Array Sequence AnalysisPeriodontitisTranscriptomeaginginflammationnonhuman primatesperiodontitis

Identifiers

PMID26077888
PMCPMC4681702
OpenAlexW2118238110

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.