Evidence map›Paper›PMID 26075523›Full record

ArticleNature chemical biology2015

Control of carotenoid biosynthesis through a heme-based cis-trans isomerase.

Jesús Beltrán, Brian Kloss, Jonathan P Hosler, Jiafeng Geng, Aimin Liu, Anuja Modi, John H Dawson, Masanori Sono, Maria Shumskaya, Charles Ampomah-Dwamena and 2 more

Abstract read
In one paragraph

Article in Nature chemical biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 81 citations in OpenAlex.

  1. Comparative analysis of ZISO-mediated carotenoid biosynthesis in Dunaliella salina and Dunaliella bardawil.International microbiology : the official journal of the Spanish Society for Microbiology · 2025
    Article
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  7. ClZISO mutation leads to photosensitive flesh in watermelon.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Review
  8. Article
  9. Article
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  11. Overexpression ofFrontiers in plant science · 2022
    Article
  12. Review
  13. Article
  14. Characterization of 15-Plants (Basel, Switzerland) · 2021
    Article
  15. A new regime of heme-dependent aromatic oxygenase superfamily.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 1 country.

Jesús Beltrán1] Department of Biological Sciences, Lehman College, City University of New York (CUNY), Bronx, New York, USA. [2] Graduate School and University Center, CUNY, New York, New York, USA.ORCID 0000000188043125
Brian KlossNew York Structural Biology Center, New York, New York, USA.
Jonathan P HoslerDepartment of Biochemistry, University of Mississippi Medical Center, Jackson, Mississippi, USA.
Jiafeng GengDepartment of Chemistry, Georgia State University, Atlanta, Georgia, USA.
Aimin LiuDepartment of Chemistry, Georgia State University, Atlanta, Georgia, USA.ORCID 0000000241828176
Anuja ModiDepartment of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina, USA.
John H DawsonDepartment of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina, USA.
Masanori SonoDepartment of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina, USA.
Maria ShumskayaDepartment of Biological Sciences, Lehman College, City University of New York (CUNY), Bronx, New York, USA.
Charles Ampomah-DwamenaDepartment of Biological Sciences, Lehman College, City University of New York (CUNY), Bronx, New York, USA.
James D LoveNew York Structural Biology Center, New York, New York, USA.
Eleanore T Wurtzel1] Department of Biological Sciences, Lehman College, City University of New York (CUNY), Bronx, New York, USA. [2] Graduate School and University Center, CUNY, New York, New York, USA.
University of South Carolina · USGeorgia State University · USLehman College · USNew York Structural Biology Center · USThe Graduate Center, CUNY · USJackson Memorial Hospital · US

Funding

Structural Genomics on Membrane ProteinsU54GM095315 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI GOUAUX, JAMES E · 2010 to 2014
$15.2M
Heme-dependent chemistry in tyrosine oxidation: Diversity Supplement on 5R01GM108988-08 for supporting Samuel MontoyaR01GM108988 · NIGMS · UNIVERSITY OF TEXAS SAN ANTONIO · PI LIU, AIMIN · 2014 to 2025
$4.2M
SPECTROSCOPY AND MECHANISMS OF HEME-IRON OXYGENASESR01GM026730 · NIGMS · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI DAWSON, JOHN H · 1985 to 2009
$2.1M
REGULATION OF PROVITAMIN A CAROTENOID BIOSYNTHESIS IN MAIZESC1GM081160 · NIGMS · HERBERT H. LEHMAN COLLEGE · PI WURTZEL, ELEANORE T · 2007 to 2010
$1.7M
NIGMS NIH HHS GM081160NIGMS NIH HHS GM095315NIGMS NIH HHS GM 26730NIGMS NIH HHS R01 GM026730NIGMS NIH HHS R01 GM108988NIGMS NIH HHS R01GM108988NIGMS NIH HHS SC1 GM081160NIGMS NIH HHS U54 GM095315
6 · The paper itself

Abstract

Plants synthesize carotenoids, which are essential for plant development and survival. These metabolites also serve as essential nutrients for human health. The biosynthetic pathway for all plant carotenoids occurs in chloroplasts and other plastids and requires 15-cis-ζ-carotene isomerase (Z-ISO). It was not known whether Z-ISO catalyzes isomerization alone or in combination with other enzymes. Here we show that Z-ISO is a bona fide enzyme and integral membrane protein. Z-ISO independently catalyzes the cis-trans isomerization of the 15-15' carbon-carbon double bond in 9,15,9'-cis-ζ-carotene to produce the substrate required by the subsequent biosynthetic-pathway enzyme. We discovered that isomerization depends upon a ferrous heme b cofactor that undergoes redox-regulated ligand switching between the heme iron and alternate Z-ISO amino acid residues. Heme b-dependent isomerization of a large hydrophobic compound in a membrane was previously undescribed. As an isomerase, Z-ISO represents a new prototype for heme b proteins and potentially uses a new chemical mechanism.

Indexed as

ArabidopsisArabidopsis ProteinsChloroplastscis-trans-IsomerasesEscherichia coliGene ExpressionHemeHydrophobic and Hydrophilic InteractionsIronIsoenzymesIsomerismMembrane ProteinsModels, MolecularOxidation-ReductionPlant ProteinsRecombinant Proteins15-cis-zeta-carotene isomerase, ArabidopsisArabidopsis Proteinscis-trans-IsomerasesHemeIronIsoenzymesMembrane ProteinsPlant ProteinsRecombinant Proteinszeta Carotene

Identifiers

PMID26075523
PMCPMC4509827
OpenAlexW1519790720

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.