ArticleFrontiers in plant science2015
Construction of a high-density integrated genetic linkage map of rubber tree (Hevea brasiliensis) using genotyping-by-sequencing (GBS).
Article in Frontiers in plant science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.
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41 citing papers in PubMed.
- Genetic analysis of agronomic and physiological traits associated with latex yield revealed complex genetic bases inHeliyon · 2024Article
- Genome-wide QTL and eQTL mapping reveal genes associated with growth rate trait of the Pacific white shrimp (Litopenaeus vannamei).BMC genomics · 2024Article
- Comparative genetic mapping and a consensus interspecific genetic map reveal strong synteny and collinearity within theFrontiers in plant science · 2024Article
- Chromosome-level wild Hevea brasiliensis genome provides new tools for genomic-assisted breeding and valuable loci to elevate rubber yield.Plant biotechnology journal · 2023Article
- Analysis of Genetic Diversity and Resistance to Foliar Pathogens Based on Genotyping-by-Sequencing of a Para Rubber Diversity Panel and Progeny of an Interspecific Cross.Plants (Basel, Switzerland) · 2022Article
- Development of Novel Markers for Yield in Hevea brasiliensis Muell. Arg. Based on Candidate Genes from Biosynthetic Pathways Associated with Latex Production.Biochemical genetics · 2022Article
- Somatic mutations during rapid clonal domestication ofEvolutionary applications · 2022Article
- A high-quality reference genome for Fraxinus pennsylvanica for ash species restoration and research.Molecular ecology resources · 2022Article
- The First Genetic Linkage Map of Winged Bean [Plants (Basel, Switzerland) · 2022Article
- Construction of a genome-wide genetic linkage map and identification of quantitative trait loci for powdery mildew resistance inFrontiers in plant science · 2022Article
- Genotyping-by-Sequencing Derived Genetic Linkage Map and Quantitative Trait Loci for Sugar Content in Onion (Plants (Basel, Switzerland) · 2021Article
- Anchoring a genetic map of an interspecific backcross two family to the genome builds of Elaeis.Journal of genetics · 2021Article
- Construction of a High-Density Genetic Map ofFrontiers in plant science · 2021Article
- Genotyping by Sequencing-Based Discovery of SNP Markers and Construction of Linkage Map from FBioMed research international · 2021Article
- A High-Density Genetic Map Enables Genome Synteny and QTL Mapping of Vegetative Growth and Leaf Traits in Gardenia.Frontiers in genetics · 2021Article
- Unravelling Rubber Tree Growth by Integrating GWAS and Biological Network-Based Approaches.Frontiers in plant science · 2021Article
- A high-density SNP-based linkage map using genotyping-by-sequencing and its utilization for improved genome assembly of chickpea (Cicer arietinum L.).Functional & integrative genomics · 2020Article
- Identification of fruit size associated quantitative trait loci featuring SLAF based high-density linkage map of goji berry (Lycium spp.).BMC plant biology · 2020Article
- ddRAD Sequencing-Based Identification of Genomic Boundaries and Permeability inFrontiers in plant science · 2020Article
- Genetic Mapping of Prince Rupprecht's Larch (Genes · 2019Article
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11 authors.
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Abstract
Construction of linkage maps is crucial for genetic studies and marker-assisted breeding programs. Recent advances in next generation sequencing technologies allow for the generation of high-density linkage maps, especially in non-model species lacking extensive genomic resources. Here, we constructed a high-density integrated genetic linkage map of rubber tree (Hevea brasiliensis), the sole commercial producer of high-quality natural rubber. We applied a genotyping-by-sequencing (GBS) technique to simultaneously discover and genotype single nucleotide polymorphism (SNP) markers in two rubber tree populations. A total of 21,353 single nucleotide substitutions were identified, 55% of which represented transition events. GBS-based genetic maps of populations P and C comprised 1704 and 1719 markers and encompassed 2041 cM and 1874 cM, respectively. The average marker densities of these two maps were one SNP in 1.23-1.25 cM. A total of 1114 shared SNP markers were used to merge the two component maps. An integrated linkage map consisted of 2321 markers and spanned the cumulative length of 2052 cM. The composite map showed a substantial improvement in marker density, with one SNP marker in every 0.89 cM. To our knowledge, this is the most saturated genetic map in rubber tree to date. This integrated map allowed us to anchor 28,965 contigs, covering 135 Mb or 12% of the published rubber tree genome. We demonstrated that GBS is a robust and cost-effective approach for generating a common set of genome-wide SNP data suitable for constructing integrated linkage maps from multiple populations in a highly heterozygous agricultural species.
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