Evidence map›Paper›PMID 26074920›Full record

ArticleFrontiers in immunology2015

A Systematic Approach to Identify Markers of Distinctly Activated Human Macrophages.

Bayan Sudan, Mark A Wacker, Mary E Wilson, Joel W Graff

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Frontiers in immunology · 2025
    Article
  3. Regulatory macrophages in solid organ xenotransplantation.Korean journal of transplantation · 2023
    Review
  4. Article
  5. Macrophage Biology in Human Granulomatous Skin Inflammation.International journal of molecular sciences · 2023
    Review
  6. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Bayan SudanInfectious Diseases Division, Department of Internal Medicine, University of Iowa , Iowa City, IA , USA.
Mark A WackerInfectious Diseases Division, Department of Internal Medicine, University of Iowa , Iowa City, IA , USA.
Mary E WilsonInfectious Diseases Division, Department of Internal Medicine, University of Iowa , Iowa City, IA , USA ; Iowa City VA Medical Center , Iowa City, IA , USA.
Joel W GraffInfectious Diseases Division, Department of Internal Medicine, University of Iowa , Iowa City, IA , USA ; Iowa City VA Medical Center , Iowa City, IA , USA.
University of Iowa · USIowa City VA Medical Center · US

Funding

TRAINING IN MECHANISMS OF PARASITISMT32AI007511 · NIAID · UNIVERSITY OF IOWA · PI BUTLER, NOAH SULLIVAN, WEBER, MARY · 1996 to 2025
$8.1M
Protective Immunity to Leishmania chagasiR01AI045540 · NIAID · UNIVERSITY OF IOWA · PI WILSON, MARY E · 2001 to 2011
$3.1M
Genetic Risk Factors for Visceral LeishmaniasisR01AI076233 · NIAID · UNIVERSITY OF IOWA · PI BLACKWELL, JENEFER MARY, WILSON, MARY E · 2009 to 2013
$1.6M
The Role of Exosomes in the Pathogenesis of LeishmaniasisI01BX000536 · VA · IOWA CITY VA MEDICAL CENTER · PI WILSON, MARY E · 2009 to 2023
–
Innate inflammatory cells in leishmaniasisI01BX001983 · VA · IOWA CITY VA MEDICAL CENTER · PI WILSON, MARY E · 2014 to 2022
–
Regulation of Leishmania-Associated Macrophage Activities by MicroRNAsIK2BX001627 · VA · IOWA CITY VA MEDICAL CENTER · PI GRAFF, JOEL W · 2013 to 2015
–
BLRD VA I01 BX000536BLRD VA I01 BX001983BLRD VA IK2 BX001627NIAID NIH HHS R01 AI045540NIAID NIH HHS R01 AI076233NIAID NIH HHS T32 AI007511
6 · The paper itself

Abstract

Polarization has been a useful concept for describing activated macrophage phenotypes and gene expression profiles. However, macrophage activation status within tumors and other settings are often inferred based on only a few markers. Complicating matters for relevance to human biology, many macrophage activation markers have been best characterized in mice and sometimes are not similarly regulated in human macrophages. To identify novel markers of activated human macrophages, gene expression profiles for human macrophages of a single donor subjected to 33 distinct activating conditions were obtained and a set of putative activation markers were subsequently evaluated in macrophages from multiple donors using integrated fluidic circuit (IFC)-based RT-PCR. Using unsupervised hierarchical clustering of the microarray screen, highly altered transcripts (>4-fold change in expression) sorted the macrophage transcription profiles into two major and 13 minor clusters. Among the 1874 highly altered transcripts, over 100 were uniquely altered in one major or two related minor clusters. IFC PCR-derived data confirmed the microarray results and determined the kinetics of expression of potential macrophage activation markers. Transcripts encoding chemokines, cytokines, and cell surface were prominent in our analyses. The activation markers identified by this study could be used to better characterize tumor-associated macrophages from biopsies as well as other macrophage populations collected from human clinical samples.

Indexed as

activation markershuman macrophagesintegrated fluidic circuit RT-PCRmacrophage polarizationmicroarray

Identifiers

PMID26074920
PMCPMC4445387
OpenAlexW1710425120

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.