Evidence map›Paper›PMID 26074065›Full record

ArticleVirology2015

Sequence specificity for uridylylation of the viral peptide linked to the genome (VPg) of enteroviruses.

Catherine H Schein, Mengyi Ye, Aniko V Paul, M Steven Oberste, Nora Chapman, Gerbrand J van der Heden van Noort, Dmitri V Filippov, Kyung H Choi

Abstract read
In one paragraph

Article in Virology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Polyglutamine Repeats in Viruses.Molecular neurobiology · 2019
    Review
  8. Review
  9. Allosteric inhibitors of Coxsackie virus A24 RNA polymerase.Bioorganic & medicinal chemistry · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Catherine H ScheinFoundation for Applied Molecular Evolution (FfAME), 13709 Progress Blvd., Alachua, FL 32616, United States. Electronic address: chschein@ffame.org.
Mengyi YeDept. Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX 77555, United States.
Aniko V PaulDept. Molecular Genetics and Microbiology, Stony Brook University, Stony Brook, NY 11790, United States.
M Steven ObersteDivision of Viral Diseases, Centers for Disease Control and Prevention, 1600 Clifton Rd NE, MS G-17, Atlanta, GA 30333, United States.
Nora ChapmanDept. Pathology and Microbiology, University of Nebraska Medical Center, NE 68198, United States.
Gerbrand J van der Heden van NoortLeiden Institute of Chemistry, Leiden University, P.O. Box 9502, 2300 RA, Leiden, The Netherlands.
Dmitri V FilippovLeiden Institute of Chemistry, Leiden University, P.O. Box 9502, 2300 RA, Leiden, The Netherlands.
Kyung H ChoiDept. Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX 77555, United States.

Funding

MECHANISM OF RNA SYNTHESIS BY DENGUE VIRUS NS5R01AI087856 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI Kyung H Choi · 2011 to 2026
$5.5M
Targeting Cyclic Dinucleotide Signaling Pathways to Interrupt the Nature Cycle of Borrelia burgdorferiR01AI152235 · NIAID · INDIANA UNIVERSITY INDIANAPOLIS · PI SINTIM, HERMAN O, YANG, X. FRANK · 2020 to 2024
$3.4M
Inhibiting protein-primed replication of human enteroviruses.R21AI105985 · NIAID · FOUNDATION FOR APPLIED MOLECULAR EVOLUTN · PI SCHEIN, CATHERINE H · 2013 to 2014
$442k
NIAID NIH HHS 1R21AI105985NIAID NIH HHS R01AI0152235NIAID NIH HHS R01 AI087856NIAID NIH HHS R01 AI152235NIAID NIH HHS R21 AI105985
6 · The paper itself

Abstract

Enteroviruses (EV) uridylylate a peptide, VPg, as the first step in their replication. VPgpUpU, found free in infected cells, serves as the primer for RNA elongation. The abilities of four polymerases (3D(pol)), from EV-species A-C, to uridylylate VPgs that varied by up to 60% of their residues were compared. Each 3D(pol) was able to uridylylate all five VPgs using polyA RNA as template, while showing specificity for its own genome encoded peptide. All 3D(pol) uridylylated a consensus VPg representing the physical chemical properties of 31 different VPgs. Thus the residues required for uridylylation and the enzymatic mechanism must be similar in diverse EV. As VPg-binding sites differ in co-crystal structures, the reaction is probably done by a second 3D(pol) molecule. The conservation of polymerase residues whose mutation reduces uridylylation but not RNA elongation is compared.

Indexed as

Protein Processing, Post-TranslationalVirus ReplicationEnterovirusHumansModels, MolecularProtein ConformationSubstrate SpecificityUridine TriphosphateViral Nonstructural ProteinsUridine TriphosphateViral Nonstructural ProteinsCoxsackie virusEV-71Metal ion dependent phosphotransferNucleotide transfer reactionPCP-consensus sequencePeptide primingPoliovirusRNA polymerase

Identifiers

PMID26074065
PMCPMC4567471

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.