Evidence map›Paper›PMID 26073543›Full record

ArticleMolecular cell2015

SIRT5 Regulates both Cytosolic and Mitochondrial Protein Malonylation with Glycolysis as a Major Target.

Yuya Nishida, Matthew J Rardin, Chris Carrico, Wenjuan He, Alexandria K Sahu, Philipp Gut, Rami Najjar, Mark Fitch, Marc Hellerstein, Bradford W Gibson and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 269 papers.

0numbers the graph read from it
0cells of the map it votes in
269citing papers in PubMed
22.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

269 citing papers in PubMed, 494 citations in OpenAlex.

  1. Advances in sirtuin research in lung diseases (Review).International journal of molecular medicine · 2026
    Review
  2. Article
  3. Review
  4. Article
  5. The Sirtuin Network: Linking NADDiabetes/metabolism research and reviews · 2026
    Review
  6. Review
  7. Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Review
  13. Review
  14. Review
  15. Review
  16. Review
  17. Review
  18. Article
  19. Article
  20. Article

209 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Yuya NishidaGladstone Institutes and University of California, San Francisco, San Francisco, CA 94158, USA.
Matthew J RardinBuck Institute for Research on Aging, 8001 Redwood Boulevard, Novato, CA 94945, USA.
Chris CarricoGladstone Institutes and University of California, San Francisco, San Francisco, CA 94158, USA.
Wenjuan HeGladstone Institutes and University of California, San Francisco, San Francisco, CA 94158, USA.
Alexandria K SahuBuck Institute for Research on Aging, 8001 Redwood Boulevard, Novato, CA 94945, USA.
Philipp GutGladstone Institutes and University of California, San Francisco, San Francisco, CA 94158, USA.
Rami NajjarCell Signaling Technology, Inc, 3 Trask Lane, Danvers, MA 01923, USA.
Mark FitchDepartment of Nutritional Sciences and Toxicology, University of California, Berkeley, Berkeley, CA 94720, USA.
Marc HellersteinDepartment of Nutritional Sciences and Toxicology, University of California, Berkeley, Berkeley, CA 94720, USA; KineMed, Inc., Emeryville, CA 94608, USA.
Bradford W GibsonBuck Institute for Research on Aging, 8001 Redwood Boulevard, Novato, CA 94945, USA. Electronic address: bgibson@buckinstitute.org.
Eric VerdinGladstone Institutes and University of California, San Francisco, San Francisco, CA 94158, USA. Electronic address: everdin@gladstone.ucsf.edu.
Gladstone Institutes · USBuck Institute for Research on Aging · USCell Signaling Technology (United States) · USKineMed (United States) · USUniversity of California, Berkeley · US

Funding

Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STEVEN Grant DEEKS · 1988 to 2026
$93.6M
UCSF Liver Core CenterP30DK026743 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Holger Willenbring · 1986 to 2026
$30.7M
Research BaseP30DK063720 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KRUMMEL, MATTHEW F · 2003 to 2019
$21.8M
REVERSIBLE MITOCHONDRIAL PROTEIN ACETYLATION AND METABOLIC REGULATIONR24DK085610 · NIDDK · J. DAVID GLADSTONE INSTITUTES · PI VERDIN, ERIC M. · 2010 to 2019
$16.0M
Training in Basic Research on Aging and Age-Related DiseaseT32AG000266 · NIA · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI Lisa M Ellerby · 1998 to 2026
$13.8M
Mass spectrometry and imaging technologies in GerosciencePL1AG032118 · NIA · BUCK INSTITUTE FOR RESEARCH ON AGING · PI GIBSON, BRADFORD WAYNE · 2007 to 2011
$4.5M
TripleTOF 5600 High Resolution Mass SpectrometerS10OD016281 · OD · BUCK INSTITUTE FOR RESEARCH ON AGING · PI GIBSON, BRADFORD WAYNE · 2013 to 2013
$597k
QSTAR Elite Quadrupole-o-TOF LC/MS/MS SystemS10RR024615 · NCRR · BUCK INSTITUTE FOR RESEARCH ON AGING · PI GIBSON, BRADFORD WAYNE · 2007 to 2007
$466k
NCRR NIH HHS S10 RR024615NIAID NIH HHS P30 AI027763NIA NIH HHS PL1 AG032118NIA NIH HHS T32 AG000266NIA NIH HHS T32AG000266NIDDK NIH HHS P30 DK026743NIDDK NIH HHS P30 DK063720NIDDK NIH HHS R24 DK085610NIH HHS S10 OD016281
6 · The paper itself

Abstract

Protein acylation links energetic substrate flux with cellular adaptive responses. SIRT5 is a NAD(+)-dependent lysine deacylase and removes both succinyl and malonyl groups. Using affinity enrichment and label free quantitative proteomics, we characterized the SIRT5-regulated lysine malonylome in wild-type (WT) and Sirt5(-/-) mice. 1,137 malonyllysine sites were identified across 430 proteins, with 183 sites (from 120 proteins) significantly increased in Sirt5(-/-) animals. Pathway analysis identified glycolysis as the top SIRT5-regulated pathway. Importantly, glycolytic flux was diminished in primary hepatocytes from Sirt5(-/-) compared to WT mice. Substitution of malonylated lysine residue 184 in glyceraldehyde 3-phosphate dehydrogenase with glutamic acid, a malonyllysine mimic, suppressed its enzymatic activity. Comparison with our previous reports on acylation reveals that malonylation targets a different set of proteins than acetylation and succinylation. These data demonstrate that SIRT5 is a global regulator of lysine malonylation and provide a mechanism for regulation of energetic flux through glycolysis.

Indexed as

AcylationAmino Acid SubstitutionAnimalsCatalytic DomainCytosolGene Knockdown TechniquesGlyceraldehyde-3-Phosphate DehydrogenasesGlycolysisHEK293 CellsHumansLiverMalonatesMetabolic Networks and PathwaysMiceMice, KnockoutMitochondrial ProteinsGlyceraldehyde-3-Phosphate DehydrogenasesMalonatesMitochondrial ProteinsSIRT5 protein, mouseSirtuins

Identifiers

PMID26073543
PMCPMC4571487
OpenAlexW1955146052

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.