Evidence map›Paper›PMID 26072518›Full record

ArticleChemical senses2015

Global Survey of Variation in a Human Olfactory Receptor Gene Reveals Signatures of Non-Neutral Evolution.

Kara C Hoover, Omer Gokcumen, Zoya Qureshy, Elise Bruguera, Aulaphan Savangsuksa, Matthew Cobb, Hiroaki Matsunami

Open access · bronzeAbstract read
In one paragraph

Article in Chemical senses, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.4field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 32 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 6 institutions in 2 countries.

Kara C HooverDepartment of Anthropology, POB 757720, University of Alaska Fairbanks, Fairbanks, AK 99775, USA, Department of Chemistry and Biochemistry, 900 Yukon Drive, University of Alaska Fairbanks, Fairbanks, AK 99775, USA, kchoover@alaska.edu.
Omer GokcumenDepartment of Biological Sciences, State University of New York at Buffalo, Buffalo, NY 14260, USA.
Zoya QureshyDepartment of Molecular Genetics and Microbiology, 264 CARL Building, Box 3509 Duke University Medical Center, Durham, NC 27710, USA and.
Elise BrugueraDepartment of Molecular Genetics and Microbiology, 264 CARL Building, Box 3509 Duke University Medical Center, Durham, NC 27710, USA and.
Aulaphan SavangsuksaDepartment of Molecular Genetics and Microbiology, 264 CARL Building, Box 3509 Duke University Medical Center, Durham, NC 27710, USA and.
Matthew CobbFaculty of Life Sciences, The University of Manchester, Oxford Road, Manchester, M13 9PL, UK.
Hiroaki MatsunamiDepartment of Molecular Genetics and Microbiology, 264 CARL Building, Box 3509 Duke University Medical Center, Durham, NC 27710, USA and.
Duke University Hospital · USDuke Medical Center · USDuke University · USUniversity at Buffalo, State University of New York · USUniversity of Alaska Fairbanks · USUniversity of Manchester · GB

Funding

Molecular Mechanisms Underlying Odorant RecognitionR01DC005782 · NIDCD · DUKE UNIVERSITY · PI MATSUNAMI, HIROAKI · 2002 to 2012
$3.5M
NIDCD NIH HHS DC005782
6 · The paper itself

Abstract

Allelic variation at 4 loci in the human olfactory receptor gene OR7D4 is associated with perceptual variation in the sex steroid-derived odorants, androstenone, and androstadienone. Androstadienone has been linked with chemosensory identification whereas androstenone makes pork from uncastrated pigs distasteful ("boar taint"). In a sample of 2224 individuals from 43 populations, we identified 45 OR7D4 single nucleotide polymorphisms. Coalescent modeling of frequency-site-spectrum-based statistics identified significant deviation from neutrality in human OR7D4; individual populations with statistically significant deviations from neutrality include Gujarati, Beijing Han, Great Britain, Iberia, and Puerto Rico. Analysis of molecular variation values indicated statistically significant population differentiation driven mainly by the 4 alleles associated with androstenone perception variation; however, fixation values were low suggesting that genetic structure may not have played a strong role in creating these group divisions. We also studied OR7D4 in the genomes of extinct members of the human lineage: Altai Neandertal and Denisovan. No variants were identified in Altai but 2 were in Denisova, one of which is shared by modern humans and one of which is novel. A functional test of modern human and a synthesized mutant Denisova OR7D4 indicated no statistically significant difference in responses to androstenone between the 2 species. Our results suggest non-neutral evolution for an olfactory receptor gene.

Indexed as

Evolution, MolecularAllelesBase SequenceDNAGenetic VariationHumansPolymorphism, Single NucleotideReceptors, OdorantDNAReceptors, OdorantAltai Neandertalandrostenone perceptionDenisovahuman variationOR7D4selection

Identifiers

PMID26072518
PMCPMC4635637
OpenAlexW2098082634

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.