Evidence map›Paper›PMID 26071953›Full record

ArticleNucleic acids research2015

Chromatin and extracellular vesicle associated sperm RNAs.

Graham D Johnson, Paula Mackie, Meritxell Jodar, Sergey Moskovtsev, Stephen A Krawetz

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
12.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 72 citations in OpenAlex.

  1. Article
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  5. Article
  6. The composition of human sperm sncRNAome: a cross-country small RNA profiling.Reproductive biology and endocrinology : RB&E · 2025
    Article
  7. Review
  8. Article
  9. Article
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  11. Article
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  13. Review
  14. Epigenetic regulations in mammalian spermatogenesis: RNA-mCellular and molecular life sciences : CMLS · 2021
    Review
  15. Article
  16. Review
  17. Heterogenic Origin of Micro RNAs in Atlantic Salmon (International journal of molecular sciences · 2020
    Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Graham D JohnsonCenter for Molecular Medicine and Genetics, Wayne State University School of Medicine, Detroit, MI 48201, USA.
Paula MackieCReATe Fertility Centre, Toronto, ON, M5G 1N8, Canada.
Meritxell JodarCenter for Molecular Medicine and Genetics, Wayne State University School of Medicine, Detroit, MI 48201, USA Department of Obstetrics and Gynaecology, University of Toronto, ON, M5G 1E2, Canada.
Sergey MoskovtsevCReATe Fertility Centre, Toronto, ON, M5G 1N8, Canada Department of Obstetrics and Gynecology, Wayne State University School of Medicine, Detroit, MI 48201, USA.
Stephen A KrawetzCenter for Molecular Medicine and Genetics, Wayne State University School of Medicine, Detroit, MI 48201, USA Department of Obstetrics and Gynaecology, University of Toronto, ON, M5G 1E2, Canada steve@compbio.med.wayne.edu.
CReATe Fertility Centre · CAWayne State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A diverse pool of RNAs remain encapsulated within the transcriptionally silent spermatozoon despite the dramatic reduction in cellular and nuclear volume following cytoplasm/nucleoplasm expulsion. The impact of this pronounced restructuring on the distribution of transcripts inside the sperm essentially remains unknown. To define their compartmentalization, total RNA >100 nt was extracted from sonicated (SS) mouse spermatozoa and detergent demembranated sucrose gradient fractionated (Cs/Tx) sperm heads. Sperm RNAs predominately localized toward the periphery. The corresponding distribution of transcripts and thus localization and complexity were then inferred by RNA-seq. Interestingly, the number of annotated RNAs in the CsTx sperm heads exhibiting reduced peripheral enrichment was restricted. However this included Cabyr, the calcium-binding tyrosine phosphorylation-regulated protein encoded transcript. It is present in murine zygotes prior to the maternal to the zygotic transition yet absent in oocytes, consistent with the delivery of internally positioned sperm-borne RNAs to the embryo. In comparison, transcripts enriched in sonicated sperm contributed to the mitochondria and exosomes along with several nuclear transcripts including the metastasis associated lung adenocarcinoma transcript 1 (Malat1) and several small nucleolar RNAs. Their preferential peripheral localization suggests that chromatin remodeling during spermiogenesis is not limited to nucleoproteins as part of the nucleoprotein exchange.

Indexed as

AnimalsCell CompartmentationChromatinExosomesHumansMaleMice, TransgenicRepetitive Sequences, Nucleic AcidRNARNA, MitochondrialRNA, RibosomalSpermatozoaChromatinRNARNA, MitochondrialRNA, Ribosomal

Identifiers

PMID26071953
PMCPMC4538811
OpenAlexW1747893016

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.