Evidence map›Paper›PMID 26071601›Full record

ArticleEMBO reports2015

Structural basis of intramitochondrial phosphatidic acid transport mediated by Ups1-Mdm35 complex.

Fang Yu, Fangyuan He, Hongyan Yao, Chengyuan Wang, Jianchuan Wang, Jianxu Li, Xiaofeng Qi, Hongwei Xue, Jianping Ding, Peng Zhang

Open access · bronzeAbstract read
In one paragraph

Article in EMBO reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 61 citations in OpenAlex.

  1. Review
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  5. Quantitative Models of Lipid Transfer and Membrane Contact Formation.Contact (Thousand Oaks (Ventura County, Calif.)) · 2022
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  10. Phospholipid ebb and flow makes mitochondria go.The Journal of cell biology · 2020
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  11. Article
  12. Review
  13. Proteolytic Control of Lipid Metabolism.ACS chemical biology · 2019
    Review
  14. Article
  15. Article
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  17. Review
  18. Article
  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Fang YuNational Center for Protein Science Shanghai and State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology Shanghai Institutes for Biological Sciences Chinese Academy of Sciences, Shanghai, China.
Fangyuan HeNational Key Laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology Shanghai Institutes for Biological Sciences Chinese Academy of Sciences, Shanghai, China.
Hongyan YaoNational Key Laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology Shanghai Institutes for Biological Sciences Chinese Academy of Sciences, Shanghai, China.
Chengyuan WangNational Key Laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology Shanghai Institutes for Biological Sciences Chinese Academy of Sciences, Shanghai, China.
Jianchuan WangNational Center for Protein Science Shanghai and State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology Shanghai Institutes for Biological Sciences Chinese Academy of Sciences, Shanghai, China.
Jianxu LiNational Key Laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology Shanghai Institutes for Biological Sciences Chinese Academy of Sciences, Shanghai, China.
Xiaofeng QiNational Key Laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology Shanghai Institutes for Biological Sciences Chinese Academy of Sciences, Shanghai, China.
Hongwei XueNational Key Laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology Shanghai Institutes for Biological Sciences Chinese Academy of Sciences, Shanghai, China hwxue@sibs.ac.cn jpding@sibcb.ac.cn pengzhang01@sibs.ac.cn.
Jianping DingNational Center for Protein Science Shanghai and State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology Shanghai Institutes for Biological Sciences Chinese Academy of Sciences, Shanghai, China hwxue@sibs.ac.cn jpding@sibcb.ac.cn pengzhang01@sibs.ac.cn.
Peng ZhangNational Key Laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology Shanghai Institutes for Biological Sciences Chinese Academy of Sciences, Shanghai, China hwxue@sibs.ac.cn jpding@sibcb.ac.cn pengzhang01@sibs.ac.cn.
Center for Excellence in Molecular Plant Sciences · CNChinese Academy of Sciences · CNCenter for Excellence in Molecular Cell Science · CNMRC Laboratory of Molecular Biology · GBShanghai Institutes for Biological Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ups1 forms a complex with Mdm35 and is critical for the transport of phosphatidic acid (PA) from the mitochondrial outer membrane to the inner membrane. We report the crystal structure of the Ups1-Mdm35-PA complex and the functional characterization of Ups1-Mdm35 in PA binding and transfer. Ups1 features a barrel-like structure consisting of an antiparallel β-sheet and three α-helices. Mdm35 adopts a three-helical clamp-like structure to wrap around Ups1 to form a stable complex. The β-sheet and α-helices of Ups1 form a long tunnel-like pocket to accommodate the substrate PA, and a short helix α2 acts as a lid to cover the pocket. The hydrophobic residues lining the pocket and helix α2 are critical for PA binding and transfer. In addition, a hydrophilic patch on the surface of Ups1 near the PA phosphate-binding site also plays an important role in the function of Ups1-Mdm35. Our study reveals the molecular basis of the function of Ups1-Mdm35 and sheds new light on the mechanism of intramitochondrial phospholipid transport by the MSF1/PRELI family proteins.

Indexed as

Amino Acid SequenceBinding SitesBiological TransportCardiolipinsCrystallography, X-RayMitochondriaMitochondrial ProteinsModels, MolecularPhosphatidic AcidsPhospholipidsProtein ConformationProtein Structure, SecondarySaccharomyces cerevisiae ProteinsCardiolipinsMdm35 protein, S cerevisiaeMitochondrial ProteinsPhosphatidic AcidsPhospholipidsSaccharomyces cerevisiae ProteinsUps1 protein, S cerevisiaecardiolipin synthesislipid transfer proteinmitochondrial morphologyphosphatidic acid transport

Identifiers

PMID26071601
PMCPMC4515121
OpenAlexW2140687094

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.