Evidence map›Paper›PMID 26070670›Full record

ArticleApplied and environmental microbiology2015

Sharply Tuned pH Response of Genetic Competence Regulation in Streptococcus mutans: a Microfluidic Study of the Environmental Sensitivity of comX.

Minjun Son, Delaram Ghoreishi, Sang-Joon Ahn, Robert A Burne, Stephen J Hagen

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. The transcription regulator BrsR serves as a network hub of natural competence protein-protein interactions inProceedings of the National Academy of Sciences of the United States of America · 2021
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  5. Environmental Triggers ofFrontiers in microbiology · 2020
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  7. Novel Probiotic Mechanisms of the Oral BacteriumApplied and environmental microbiology · 2019
    Article
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  11. Expanding the Vocabulary of Peptide Signals inFrontiers in cellular and infection microbiology · 2019
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Intercellular Communication via theJournal of bacteriology · 2017
    Article
  18. Article
  19. Article
  20. RNA-Seq Reveals Enhanced Sugar Metabolism inFrontiers in microbiology · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Minjun SonDepartment of Physics, University of Florida, Gainesville, Florida, USA.
Delaram GhoreishiDepartment of Physics, University of Florida, Gainesville, Florida, USA.
Sang-Joon AhnDepartment of Oral Biology, University of Florida, Gainesville, Florida, USA.
Robert A BurneDepartment of Oral Biology, University of Florida, Gainesville, Florida, USA.
Stephen J HagenDepartment of Physics, University of Florida, Gainesville, Florida, USA sjhagen@ufl.edu.ORCID http://orcid.org/0000-0002-3373-5033
University of Florida · US

Funding

GENETICS AND PHYSIOLOGY OF ORAL BIOFILMSR01DE013239 · NIDCR · UNIVERSITY OF ROCHESTER · PI BURNE, ROBERT A · 1999 to 2019
$6.6M
Environmental regulation of gene expression dissected by microfluidicsR01DE023339 · NIDCR · UNIVERSITY OF FLORIDA · PI BURNE, ROBERT A, HAGEN, STEPHEN JAMES · 2014 to 2018
$1.9M
NIDCR NIH HHS 1R01DE023339NIDCR NIH HHS 1R01DE13239NIDCR NIH HHS R01 DE013239NIDCR NIH HHS R01 DE023339
6 · The paper itself

Abstract

Genetic competence in Streptococcus mutans is a transient state that is regulated in response to multiple environmental inputs. These include extracellular pH and the concentrations of two secreted peptides, designated CSP (competence-stimulating peptide) and XIP (comX-inducing peptide). The role of environmental cues in regulating competence can be difficult to disentangle from the effects of the organism's physiological state and its chemical modification of its environment. We used microfluidics to control the extracellular environment and study the activation of the key competence gene comX. We find that the comX promoter (PcomX) responds to XIP or CSP only when the extracellular pH lies within a narrow window, about 1 pH unit wide, near pH 7. Within this pH range, CSP elicits a strong PcomX response from a subpopulation of cells, whereas outside this range the proportion of cells expressing comX declines sharply. Likewise, PcomX is most sensitive to XIP only within a narrow pH window. While previous work suggested that comX may become refractory to CSP or XIP stimulus as cells exit early exponential phase, our microfluidic data show that extracellular pH dominates in determining sensitivity to XIP and CSP. The data are most consistent with an effect of pH on the ComR/ComS system, which has direct control over transcription of comX in S. mutans.

Indexed as

Bacterial ProteinsBacteriological TechniquesDNA Transformation CompetenceGene Expression ProfilingGene Expression Regulation, BacterialHydrogen-Ion ConcentrationMicrofluidicsPromoter Regions, GeneticProtein BindingStreptococcus mutansTranscription FactorsBacterial ProteinsComX protein, StreptococcusTranscription Factors

Identifiers

PMID26070670
PMCPMC4510173
OpenAlexW1751708135

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.