Evidence map›Paper›PMID 26070668›Full record

ArticleApplied and environmental microbiology2015

Diversity of O Antigens within the Genus Cronobacter: from Disorder to Order.

Martina Blažková, Barbora Javůrková, Jiří Vlach, Sandra Göselová, Ludmila Karamonová, Pauline Ogrodzki, Stephen Forsythe, Ladislav Fukal

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 35 citations in OpenAlex.

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  16. DNA-Sequence Based Typing of theFrontiers in microbiology · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Martina BlažkováDepartment of Biochemistry and Microbiology, University of Chemistry and Technology, Prague, Prague, Czech Republic martina.blazkova@vscht.cz.
Barbora JavůrkováDepartment of Biochemistry and Microbiology, University of Chemistry and Technology, Prague, Prague, Czech Republic.
Jiří VlachDepartment of Biochemistry and Microbiology, University of Chemistry and Technology, Prague, Prague, Czech Republic.
Sandra GöselováDepartment of Biochemistry and Microbiology, University of Chemistry and Technology, Prague, Prague, Czech Republic.
Ludmila KaramonováDepartment of Biochemistry and Microbiology, University of Chemistry and Technology, Prague, Prague, Czech Republic.
Pauline OgrodzkiPathogen Research Group, School of Science and Technology, Nottingham Trent University, Nottingham, United Kingdom.
Stephen ForsythePathogen Research Group, School of Science and Technology, Nottingham Trent University, Nottingham, United Kingdom.
Ladislav FukalDepartment of Biochemistry and Microbiology, University of Chemistry and Technology, Prague, Prague, Czech Republic.
University of Chemistry and Technology, Prague · CZNottingham Trent University · GB

Funding

Wellcome Trust
6 · The paper itself

Abstract

Cronobacter species are Gram-negative opportunistic pathogens that can cause serious infections in neonates. The lipopolysaccharides (LPSs) that form part of the outer membrane of such bacteria are possibly related to the virulence of particular bacterial strains. However, currently there is no clear overview of O-antigen diversity within the various Cronobacter strains and links with virulence. In this study, we tested a total of 82 strains, covering each of the Cronobacter species. The nucleotide variability of the O-antigen gene cluster was determined by restriction fragment length polymorphism (RFLP) analysis. As a result, the 82 strains were distributed into 11 previously published serotypes and 6 new serotypes, each defined by its characteristic restriction profile. These new serotypes were confirmed using genomic analysis of strains available in public databases: GenBank and PubMLST Cronobacter. Laboratory strains were then tested using the current serotype-specific PCR probes. The results show that the current PCR probes did not always correspond to genomic O-antigen gene cluster variation. In addition, we analyzed the LPS phenotype of the reference strains of all distinguishable serotypes. The identified serotypes were compared with data from the literature and the MLST database (www.pubmlst.org/cronobacter/). Based on the findings, we systematically classified a total of 24 serotypes for the Cronobacter genus. Moreover, we evaluated the clinical history of these strains and show that Cronobacter sakazakii O2, O1, and O4, C. turicensis O1, and C. malonaticus O2 serotypes are particularly predominant in clinical cases.

Indexed as

Genetic VariationCronobacterDNA, BacterialDNA FingerprintingEnterobacteriaceae InfectionsGenotypeHumansMultigene FamilyMultilocus Sequence TypingO AntigensOligonucleotide ProbesPolymerase Chain ReactionPolymorphism, Restriction Fragment LengthSerogroupDNA, BacterialO AntigensOligonucleotide Probes

Identifiers

PMID26070668
PMCPMC4510170
OpenAlexW1946758924

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.