Evidence map›Paper›PMID 26070639›Full record

ArticleAnnals of botany2015

SlbHLH068 interacts with FER to regulate the iron-deficiency response in tomato.

Juan Du, Zongan Huang, Biao Wang, Hua Sun, Chunlin Chen, Hong-Qing Ling, Huilan Wu

Open access · bronzeAbstract read
In one paragraph

Article in Annals of botany, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 35 citations in OpenAlex.

  1. AlfalfaFrontiers in plant science · 2024
    Article
  2. Iron in the Symbiosis of Plants and Microorganisms.Plants (Basel, Switzerland) · 2023
    Review
  3. Article
  4. Review
  5. Article
  6. Pepper bHLH transcription factorHorticulture research · 2022
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Mapping and Characterization of theFrontiers in plant science · 2017
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 2 countries.

Juan DuThe State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, West Beichen Road 1, Chaoyang District, Beijing 100101, China.
Zongan HuangThe State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, West Beichen Road 1, Chaoyang District, Beijing 100101, China.
Biao WangThe State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, West Beichen Road 1, Chaoyang District, Beijing 100101, China.
Hua SunThe State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, West Beichen Road 1, Chaoyang District, Beijing 100101, China.
Chunlin ChenThe State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, West Beichen Road 1, Chaoyang District, Beijing 100101, China.
Hong-Qing LingThe State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, West Beichen Road 1, Chaoyang District, Beijing 100101, China hqling@genetics.ac.cn hlwu@genetics.ac.cn.
Huilan WuThe State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, West Beichen Road 1, Chaoyang District, Beijing 100101, China hqling@genetics.ac.cn hlwu@genetics.ac.cn.
Institute of Genetics and Developmental Biology · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BACKGROUND AND

aimsIron is an essential micronutrient for all organisms and its uptake, translocation, distribution and utilization are regulated in a complex manner in plants. FER, isolated from tomato (Solanum lycopersicum), was the first transcription factor involved in the iron homeostasis of higher plants to be identified. A FER defect in the T3238fer mutant drastically downregulates the expression of iron uptake genes, such as ferric-chelate reductase 1 (LeFRO1) and iron-regulated transporter 1 (LeIRT1); however, the molecular mechanism by which FER regulates genes downstream remains unknown. The aim of this work was therefore to identify the gene that interacts with FER to regulate the iron-deficiency response in tomato.

methodsThe homologue of the Arabidopsis Ib subgroup of the basic helix-loop-helix (bHLH) proteins, SlbHLH068, was identified by using the program BLASTP against the AtbHLH39 amino acid sequence in the tomato genome. The interaction between SlbHLH068 and FER was detected using yeast two-hybrid and bimolecular fluorescence complementation (BiFC) assays. In addition, virus-induced gene silencing (VIGS) was used to generate tomato plants in which SlbHLH068 expression was downregulated. The expression of genes was analysed using northern blot hybridization and multiple RT-PCR analysis. Seedlings of wild-type and mutant plants were grown under conditions of different nutrient deficiency. KEY

resultsSlbHLH068 is highly upregulated in roots, leaves and stems in response to iron deficiency. An interaction between SlbHLH068 and FER was demonstrated using yeast two-hybrid and BiFC assays. The heterodimer formed by FER with SlbHLH068 directly bound to the promoter of LeFRO1 and activated the expression of its reporter gene in the yeast assay. The downregulation of SlbHLH068 expression by VIGS resulted in a reduction of LeFRO1 and LeIRT1 expression and iron accumulation in leaves and roots.

conclusionsThe results indicate that SlbHLH068, as a putative transcription factor, is involved in iron homeostasis in tomato via an interaction with FER.

Indexed as

Iron DeficienciesAmino Acid SequenceCell NucleusFluorescenceGene Expression ProfilingGene Expression Regulation, PlantGenes, PlantGlucuronidaseIronModels, BiologicalMolecular Sequence DataMutationPlant ProteinsPromoter Regions, GeneticProtein BindingProtein MultimerizationGlucuronidaseIronPlant ProteinsFERferric-chelate reductase 1iron deficiencyiron homeostasisiron-regulated transporter 1SlbHLH068Solanum lycopersicumTomatotranscription factor

Identifiers

PMID26070639
PMCPMC4479748
OpenAlexW2111942725

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.