Evidence map›Paper›PMID 26070134›Full record

ArticlePloS one2015

Computational Model of Ca2+ Wave Propagation in Human Retinal Pigment Epithelial ARPE-19 Cells.

Iina Vainio, Amna Abu Khamidakh, Michelangelo Paci, Heli Skottman, Kati Juuti-Uusitalo, Jari Hyttinen, Soile Nymark

Abstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review of the clinical electrooculogram - Part 1: Mechanism of the Light-Rise.Documenta ophthalmologica. Advances in ophthalmology · 2026
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  5. Ocular complications with the use of radium-223: a case series.Radiation oncology (London, England) · 2022
    Article
  6. Article
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Iina VainioDepartment of Electronics and Communications Engineering, Tampere University of Technology, Tampere, Finland; Institute of Biosciences and Medical Technology, Tampere University of Technology, Tampere, Finland.
Amna Abu KhamidakhDepartment of Electronics and Communications Engineering, Tampere University of Technology, Tampere, Finland; Institute of Biosciences and Medical Technology, Tampere University of Technology, Tampere, Finland.
Michelangelo PaciDepartment of Electronics and Communications Engineering, Tampere University of Technology, Tampere, Finland; Institute of Biosciences and Medical Technology, Tampere University of Technology, Tampere, Finland.
Heli SkottmanInstitute of Biosciences and Medical Technology, University of Tampere, Tampere, Finland.
Kati Juuti-UusitaloInstitute of Biosciences and Medical Technology, University of Tampere, Tampere, Finland.
Jari HyttinenDepartment of Electronics and Communications Engineering, Tampere University of Technology, Tampere, Finland; Institute of Biosciences and Medical Technology, Tampere University of Technology, Tampere, Finland.
Soile NymarkDepartment of Electronics and Communications Engineering, Tampere University of Technology, Tampere, Finland; Institute of Biosciences and Medical Technology, Tampere University of Technology, Tampere, Finland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveComputational models of calcium (Ca²⁺) signaling have been constructed for several cell types. There are, however, no such models for retinal pigment epithelium (RPE). Our aim was to construct a Ca²⁺ signaling model for RPE based on our experimental data of mechanically induced Ca²⁺ wave in the in vitro model of RPE, the ARPE-19 monolayer.

methodsWe combined six essential Ca²⁺ signaling components into a model: stretch-sensitive Ca²⁺ channels (SSCCs), P₂Y₂ receptors, IP₃ receptors, ryanodine receptors, Ca²⁺ pumps, and gap junctions. The cells in our epithelial model are connected to each other to enable transport of signaling molecules. Parameterization was done by tuning the above model components so that the simulated Ca²⁺ waves reproduced our control experimental data and data where gap junctions were blocked.

resultsOur model was able to explain Ca²⁺ signaling in ARPE-19 cells, and the basic mechanism was found to be as follows: 1) Cells near the stimulus site are likely to conduct Ca²⁺ through plasma membrane SSCCs and gap junctions conduct the Ca²⁺ and IP₃ between cells further away. 2) Most likely the stimulated cell secretes ligand to the extracellular space where the ligand diffusion mediates the Ca²⁺ signal so that the ligand concentration decreases with distance. 3) The phosphorylation of the IP₃ receptor defines the cell's sensitivity to the extracellular ligand attenuating the Ca²⁺ signal in the distance.

conclusionsThe developed model was able to simulate an array of experimental data including drug effects. Furthermore, our simulations predict that suramin may interfere ligand binding on P₂Y₂ receptors or accelerate P₂Y₂ receptor phosphorylation, which may partially be the reason for Ca²⁺ wave attenuation by suramin. Being the first RPE Ca²⁺ signaling model created based on experimental data on ARPE-19 cell line, the model offers a platform for further modeling of native RPE functions.

Indexed as

Calcium SignalingComputer SimulationModels, BiologicalAlgorithmsCalciumCell LineEpithelial CellsHumansRetinal Pigment EpitheliumCalcium

Identifiers

PMID26070134
PMCPMC4466493

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.