Evidence map›Paper›PMID 26069090›Full record

ArticleAngewandte Chemie (International ed. in English)2015

Fragment-Based De Novo Design Reveals a Small-Molecule Inhibitor of Helicobacter Pylori HtrA.

Anna M Perna, Tiago Rodrigues, Thomas P Schmidt, Manja Böhm, Katharina Stutz, Daniel Reker, Bernhard Pfeiffer, Karl-Heinz Altmann, Steffen Backert, Silja Wessler and 1 more

Open access · greenAbstract read
In one paragraph

Article in Angewandte Chemie (International ed. in English), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 48 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Molecular Targets inBiomolecules · 2023
    Review
  8. Review
  9. Article
  10. Review
  11. Campylobacter Virulence Factors and Molecular Host-Pathogen Interactions.Current topics in microbiology and immunology · 2021
    Review
  12. Toxins · 2019
    Review
  13. Article
  14. The unique trimeric assembly of the virulence factor HtrA fromThe Journal of biological chemistry · 2019
    Article
  15. Review
  16. Article
  17. Function of Serine Protease HtrA in the Lifecycle of the Foodborne PathogenEuropean journal of microbiology & immunology · 2018
    Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 3 countries.

Anna M PernaDepartment of Chemistry and Applied Biosciences, ETH Zurich, Vladimir-Prelog-Weg 4, 8093 Zürich (Switzerland).
Tiago RodriguesDepartment of Chemistry and Applied Biosciences, ETH Zurich, Vladimir-Prelog-Weg 4, 8093 Zürich (Switzerland).
Thomas P SchmidtDepartment of Molecular Biology, Universität Salzburg (Austria).
Manja BöhmDepartment of Biology, Universität Erlangen-Nürnberg (Germany).
Katharina StutzDepartment of Chemistry and Applied Biosciences, ETH Zurich, Vladimir-Prelog-Weg 4, 8093 Zürich (Switzerland).
Daniel RekerDepartment of Chemistry and Applied Biosciences, ETH Zurich, Vladimir-Prelog-Weg 4, 8093 Zürich (Switzerland).
Bernhard PfeifferDepartment of Chemistry and Applied Biosciences, ETH Zurich, Vladimir-Prelog-Weg 4, 8093 Zürich (Switzerland).
Karl-Heinz AltmannDepartment of Chemistry and Applied Biosciences, ETH Zurich, Vladimir-Prelog-Weg 4, 8093 Zürich (Switzerland).
Steffen BackertDepartment of Biology, Universität Erlangen-Nürnberg (Germany).
Silja WesslerDepartment of Molecular Biology, Universität Salzburg (Austria).
Gisbert SchneiderDepartment of Chemistry and Applied Biosciences, ETH Zurich, Vladimir-Prelog-Weg 4, 8093 Zürich (Switzerland). gisbert.schneider@pharma.ethz.ch.
ETH Zurich · CHFriedrich-Alexander-Universität Erlangen-Nürnberg · DEUniversity of Salzburg · AT

Funding

Austrian Science Fund FWF P 24074
6 · The paper itself

Abstract

Sustained identification of innovative chemical entities is key for the success of chemical biology and drug discovery. We report the fragment-based, computer-assisted de novo design of a small molecule inhibiting Helicobacter pylori HtrA protease. Molecular binding of the designed compound to HtrA was confirmed through biophysical methods, supporting its functional activity in vitro. Hit expansion led to the identification of the currently best-in-class HtrA inhibitor. The results obtained reinforce the validity of ligand-based de novo design and binding-kinetics-guided optimization for the efficient discovery of pioneering lead structures and prototyping drug-like chemical probes with tailored bioactivity.

Indexed as

Drug DesignBacterial ProteinsComputer-Aided DesignDrug DiscoveryHelicobacter InfectionsHelicobacter pyloriHumansLigandsPeptide HydrolasesProtease InhibitorsSmall Molecule LibrariesStructure-Activity RelationshipBacterial ProteinsLigandsPeptide HydrolasesProtease InhibitorsSmall Molecule Librariesbiophysical methodschemical biologycomputer-assisted drug designdrug designreceptor-ligand interactions

Identifiers

PMID26069090
PMCPMC6311382
OpenAlexW2170464542

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.