Evidence map›Paper›PMID 26067561›Full record

ArticleScientific reports2015

Diversity and functions of bacterial community in drinking water biofilms revealed by high-throughput sequencing.

Yuanqing Chao, Yanping Mao, Zhiping Wang, Tong Zhang

Abstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

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  13. Changes in Microbial Community Structures under Reclaimed Water Replenishment Conditions.International journal of environmental research and public health · 2020
    Article
  14. Urbanization and Waterborne Pathogen Emergence in Low-Income Countries: Where and How to Conduct Surveys?International journal of environmental research and public health · 2020
    Review
  15. Article
  16. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Yuanqing Chao1] Environmental Biotechnology Laboratory, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, China [2] School of Environmental Science and Engineering, Sun Yat-Sen University, Guangzhou, China.
Yanping MaoEnvironmental Biotechnology Laboratory, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, China.
Zhiping Wang1] Environmental Biotechnology Laboratory, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, China [2] School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai, China.
Tong ZhangEnvironmental Biotechnology Laboratory, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The development of biofilms in drinking water (DW) systems may cause various problems to water quality. To investigate the community structure of biofilms on different pipe materials and the global/specific metabolic functions of DW biofilms, PCR-based 454 pyrosequencing data for 16S rRNA genes and Illumina metagenomic data were generated and analysed. Considerable differences in bacterial diversity and taxonomic structure were identified between biofilms formed on stainless steel and biofilms formed on plastics, indicating that the metallic materials facilitate the formation of higher diversity biofilms. Moreover, variations in several dominant genera were observed during biofilm formation. Based on PCA analysis, the global functions in the DW biofilms were similar to other DW metagenomes. Beyond the global functions, the occurrences and abundances of specific protective genes involved in the glutathione metabolism, the SoxRS system, the OxyR system, RpoS regulated genes, and the production/degradation of extracellular polymeric substances were also evaluated. A near-complete and low-contamination draft genome was constructed from the metagenome of the DW biofilm, based on the coverage and tetranucleotide frequencies, and identified as a Bradyrhizobiaceae-like bacterium according to a phylogenetic analysis. Our findings provide new insight into DW biofilms, especially in terms of their metabolic functions.

Indexed as

BiofilmsBradyrhizobiaceaeHigh-Throughput Nucleotide SequencingWater MicrobiologyDrinking WaterMicrobial ConsortiaPhylogenyRNA, BacterialRNA, Ribosomal, 16SDrinking WaterRNA, BacterialRNA, Ribosomal, 16S

Identifiers

PMID26067561
PMCPMC4464384

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.